BtaEX6021020 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016496 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:HGNC:31834]
Coordinates
chr5:32102305-32104973:+
Coord C1 exon
chr5:32102305-32102396
Coord A exon
chr5:32104109-32104238
Coord C2 exon
chr5:32104860-32104973
Length
130 bp
Sequences
Splice sites
3' ss Seq
GATGCTGCATTTTGTTTCAGGGC
3' ss Score
9.07
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
Exon sequences
Seq C1 exon
CTCAGTCCACTCCCTGGGTTCCTGCCATTCCCCAAGAAGGGAGCACTGGAGACTGGGAGATGGCAGCTGCACTTCTTGCGGCGGGATCACAG
Seq A exon
GGCCTGGTAACCATCAAGGATGTGTCACTGTGCTTCTCTCAGGAGGAGTGGAGGAGCCTGGACCCTTCTCAAACAGACTTCTATGGAGAATATGTCATGCAGGAAAACTGTGGGATAGTGGTCTCCCTGA
Seq C2 exon
GATTTCCAATTCCCAAACTGGATATGCTTTCTCAACTAGAAGGAGGAGAAGAACAATGGGTCCCTGACCCCCCAGACTTAGAAGAGAGGGACATTCTGAAGGTCACATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016496-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=0.045 C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.5)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGTCCACTCCCTGGGTTC
R:
TGTATGTGACCTTCAGAATGTCCC
Band lengths:
203-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]