RnoEX0101610 @ rn6
Exon Skipping
Gene
ENSRNOG00000032447 | Zfp641
Description
zinc finger protein 641 [Source:RGD Symbol;Acc:1310412]
Coordinates
chr7:139902500-139904578:-
Coord C1 exon
chr7:139904487-139904578
Coord A exon
chr7:139903172-139903301
Coord C2 exon
chr7:139902500-139902613
Length
130 bp
Sequences
Splice sites
3' ss Seq
AACTGCCTGTCTTGTTTCAGGGC
3' ss Score
10.89
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
Exon sequences
Seq C1 exon
CACCGTCTGCTCCCTGGGTTCCTGCCGTCCCCCAGGAGGGGGACACTGGAGACTGGGAAATGGCAGCCGCACTTCTTGCAGCTGGGTCCCAG
Seq A exon
GGCCTAGTAACTATCAAGGATGTGTCCTTATGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCCCAGACAGACTTTTACGGAGAATATGTCATGCAGGAAAATTGTGGGATCGTCGTCTCTCTGA
Seq C2 exon
GGTTTCCCATCCCCAAACTGGACATGCTTCCTCAGCTAGAAGGAGGAGAAGAACAGTGGGTCCCTGACCCCCAGGACGTAGAGGGGAGGGACATCCGGAAGGTCACGTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032447-'3-11,'3-9,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.806 A=0.136 C2=0.744
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.5)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENSRNOT00000045473fB16985
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCTCCCTGGGTTCCT
R:
CTGCATACGTGACCTTCCGGA
Band lengths:
202-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]