GgaEX1004758 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GLA1]
Coordinates
chr2:539301-543542:+
Coord C1 exon
chr2:539301-539699
Coord A exon
chr2:541631-541757
Coord C2 exon
chr2:543418-543542
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTGGTGCTTTTAATTGCAGGTC
3' ss Score
9.85
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
Exon sequences
Seq C1 exon
GACCTGGAGTGGGCCATGGAGCCCCAGGAGCTGTCCCTGGAACAACCCCTGGCCGCCCCCGAGGAAGGGCCCGGCAGGGAGGCCGAGCTGCCCGCCGCCGAGATCTCGGTGACGCTGGTGACGGAGGTGCAGGCCGTGGACAGGAAGGTGGAGGCGCAGGCGGCCCAGCTGATGAACCTGGAGGGCAGGATGAGGATGGCTGAGAGCAAACTGATCGGCTGCGAGAGGACGGCCGTGGAGTTCGGCAACCAGCTGGAGAGCAAATGGACGGCCCTGGGCACCCTCATCCAGGAGTACGGGCAGCTGCAGAAGAGGCTGGAGAACATGGAGAACCTGCTGAAGAATAGGAACTTCTGGATCCTGCGCCTGCCCCCGGGGGCCAAGGGGGAAGTCCCCAAG
Seq A exon
GTCCCCATGGCGTTTAACGACACTTCATTTAGCTTCTCGGAGGACGAGTGGAAGAACTTGAACGAGTGGCAGAAAGAGCTTTACAGGCATATCATGAAGGGCAACTACGAGGCCGTGATCTCGATGG
Seq C2 exon
ATACTGCAATTTCAAAACCTGACCTCCTGTCACGGATTGAGCAAGGAGAGGATCCCAATGCTGAGGACCAGGATGACTCTGAGGGAGGAGAAACCCCTACGGATCCCAGCACCGGTGAGACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026922_MULTIEX1-2/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.070 C2=0.837
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=54.9)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAGCAAACTGATCGGCTG
R:
TCCTCTCCTTGCTCAATCCGT
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]