MmuEX0053194 @ mm10
Exon Skipping
Gene
ENSMUSG00000025821 | Zfp282
Description
zinc finger protein 282 [Source:MGI Symbol;Acc:MGI:2141413]
Coordinates
chr6:47880000-47890723:+
Coord C1 exon
chr6:47880000-47880419
Coord A exon
chr6:47890066-47890192
Coord C2 exon
chr6:47890604-47890723
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAAAACCCTTGTTGGTCCAGGTC
3' ss Score
6.77
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GCTCAAGAATGGGACATGGATGCCAGGAGACCAATGCCTTTTCAGTTCCCGCCCTTTCCAGATAGGGCCCCTGTCTTTCCTGACCGCATGATGCGTGAGCCCCAGTTGCCCACAGCAGAGATCTCGCTCTGGACCGTGGTGGCTGCCATTCAGGCTGTAGAGAGGAAGGTGGATGCCCAAGCTAGCCAGCTGCTGAACTTGGAGGGACGCACAGGCACAGCAGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTTGGTAACCACATGGAGAGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGCCTGCTGCAACGTCGCCTGGAGAACCTGGAGAACCTGCTTCGCAACAGGAACTTCTGGGTCCTGCGGCTGCCCCCTGGCAGCAAGGGGGAGGCCCCCAAG
Seq A exon
GTCCCGGTGACCTTCGTCGACATTGCTGTCTACTTCTCTGAGGACGAATGGAAGAACTTGGACGAATGGCAGAAGGAGCTCTACAGCAATCTGGTGAAGGAGAACTACAAAACCCTGATGTCCCTGG
Seq C2 exon
ACACAGATGGCCCAGTGTCCAAGCCAGACCCTCCGGTCCAGGCAGAACCCAGGGAAGAGCCTTGTGTGTGGGAGCAGCATCACCCCGAAGAGAGAGAAATCCCAGTGACTGCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025821-'5-4,'5-3,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=0.047 C2=1.000
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=57.1)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCACATGGAGAGCAAGTGG
R:
TCTCTCTCTTCGGGGTGATGC
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types