BtaEX6029339 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020448 | ZNF282
Description
zinc finger protein 282 [Source:HGNC Symbol;Acc:HGNC:13076]
Coordinates
chr4:113086193-113095738:+
Coord C1 exon
chr4:113086193-113086674
Coord A exon
chr4:113094981-113095107
Coord C2 exon
chr4:113095619-113095738
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAACGCTGTTGTTGGCCCAGGTT
3' ss Score
5.1
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GCCACCCTCGCTCCTCACACGGGGTCTCATGCCGGCCGTCACTTCCCCTCCTCTGCCCGCAGGCTCAGGAATGGGACATGGATGCCCGGCGACCGATGCCTTTCCAGTTCCCGCCCTTCCCAGATCGGGCCCCCGTCTTCCCCGACCGCATGATGCGAGAGCCCCAGCTGCCCACAGCGGAGATCTCGCTCTGGACCGTGGTGGCCGCCATCCAGGCCGTGGAGAGGAAGGTGGACGCCCAGGCCAGCCAGCTGCTCAACCTGGAGGGCCGGACGGGGACGGCCGAGAAGAAGCTGGCCGACTGCGAGAAGACGGCCGTGGAGTTCGGGAACCACATGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTCCTGCAGAGGCGGCTGGAGAACATGGAGAACCTGCTGAGGAACAGGAATTTCTGGGTCCTGCGGCTGCCCCCAGGCAGCAAGGGCGAGGTCCCCAAG
Seq A exon
GTTCCAGTGACCTTTGTGGACATCGCTGTTTACTTCTCCGAGGACGAGTGGAAGAACCTGGACGAATGGCAGAAGGAGCTTTACAACAACCTGGTTAAGGAGAACTACAAAACCCTGATGTCCCTGG
Seq C2 exon
ACTCGGAGGGACCCGTGTCCAAGCCGGAAGCCCCATCTCAGGCTGAGCCCCGGGAAGAGCCCTGCGTGTGGGAGCAGCGTGACCCAGAAGAGAGAGAGATCCTCATGGATCCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020448-'2-5,'2-3,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=0.047 C2=0.996
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=49.7)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCACATGGAGGGCAAGTG
R:
TCTCTCTCTTCTGGGTCACGC
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]