GgaEX6018024 @ galGal3
Exon Skipping
Gene
ENSGALG00000004819 | ZNF767
Description
NA
Coordinates
chr2:415801-417661:+
Coord C1 exon
chr2:415801-416243
Coord A exon
chr2:416907-417033
Coord C2 exon
chr2:417563-417661
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTGACTTTTACAATTGCAGGGC
3' ss Score
9.02
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
CAGCTAAAGGATCCTGCAGGACACCGGGAGCAGAATAGCTGCCAGCCTCAGCCTCTTCGTTGGAGCGGGACATGGCCTCCGCGCTCCCCGGCAGCTGCCTCTGCTCATCCAGCCTCCCTCAAGCACCGGGCGAAGCCGTGCCAAGCAGCACCGCCAGCATCTCACTGTGGACAGTGGTGGCTGCTGTGCAGGCGGTGGAGAAGAGCGTAGAGGCCCACGCCTCCCGGCTGCTCAACCTTGAGCGCAGGACGGTGACCACTGAGAAAAAGTACTTGGACTGTGAAAAAACAGTGGTGGATTTTGGGAACCAGCTGGAGAGTAAGCTGACCGTACTGGGCACTCTCATCCGGGAGTACGGGCAGTTGCAGCGGCGTCTGGAGCACATGGAGAACCTGCTGAAGAACAGGAATTTTTGCATACTGCGCCTGCCCCCCGCCCCCAAG
Seq A exon
GGCCCGGAGGCGTCTGAAAGTGAAACTGCTTGCTTTGCTGAGCAAGAGTGGGAGAACCTGGAGGAATGGCAGAAGGAGCTGTACAGGAACATGCTGAGAGGGAACAGTGAATCTCTGAACTCTCTGG
Seq C2 exon
ATTATTCAGTCTCCAGATCTGACTTGTCCCAGCTTCAGAGAGGAGAAGCGCCCTGCAGTGAGGTGACCTCAGCACAGAAGGAGGTTCCTACAGAACCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004819-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
83%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.232 C2=0.626
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=63.7)
A:
PF0135222=KRAB=WD(100=81.4)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACGGTGACCACTGAGAAA
R:
CTCCTCTCTGAAGCTGGGACA
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]