BtaEX6029341 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000389 | ZNF212
Description
zinc finger protein 212 [Source:HGNC Symbol;Acc:HGNC:13004]
Coordinates
chr4:113127975-113129652:+
Coord C1 exon
chr4:113127975-113128370
Coord A exon
chr4:113128472-113128598
Coord C2 exon
chr4:113129563-113129652
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTGACGTTTGTGATTCCAGGTG
3' ss Score
7.67
5' ss Seq
TGAGTAGGT
5' ss Score
3.27
Exon sequences
Seq C1 exon
CTTCAGCACAGGAGGAAGCACCGCTCCAGCCCTCTGACTTCCTCCAGGCCACCCCCACAAGCAACGGAGAAAAGCTCCTACCTGGAGACCACAGAGATCTCGCTCTGGACCGTGGTGGCCGCCATCCAGGCCATGGAGAAGAAGGTGGAGTCCCAGGCCGCCCGCCTGCTGACTCTGGAGGGGCGGGCGGGGACAGCCGAGAAGAAGCTGGCTGACTGCGAGAAGACGGCCGTGGAGCTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACGTGGAGAACCTGCTGAGGAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGCAGCAACGGGGAAGTTCCCAAG
Seq A exon
GTGTCCAGGTCACTTGAAAATGATGGCGTCTGCTTTTCAGAGCAGGAGTGGGAGAACCTGGAGGACTGGCAGAAGGAGCTCTATGCCAACGTGATGAAGAGCAACTATGAGACTCTGGTCTCTCTGA
Seq C2 exon
AGGTGCTTGGCCAGCCTGAAGGAGAAGTGGAGTTGGGTGCAGAGATGCCGGGTGACTTGGAGGAGGAAGAGTCTCGTGGTGTCCACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000389-'1-5,'1-2,2-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.023 C2=0.774
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=60.6)
A:
PF0135222=KRAB=WD(100=90.7)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAAGAAGCTGGCTGACTG
R:
CATCTCTGCACCCAACTCCAC
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]