RnoEX0101117 @ rn6
Exon Skipping
Gene
ENSRNOG00000006711 | Zfp212
Description
Zinc finger protein 212 [Source:RGD Symbol;Acc:1307836]
Coordinates
chr4:77598160-77600664:+
Coord C1 exon
chr4:77598160-77598549
Coord A exon
chr4:77598674-77598800
Coord C2 exon
chr4:77600584-77600664
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTGTGGCTTACAATTGCAGGTG
3' ss Score
8.31
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
CACAGGAGGAAAAGGCGCTCCACACCGTTAGCTCCAGCCACACCACCTTCACAGACAACAGAGAAAAGCCAGTACTTCCAGACCACAGAAATCTCACTTTGGACAGTGGTGGCTGCTATTCAAGCTGTGGAGAAGAAGATGGAATCCCAGGCTGCCCGACTGCAGAGCCTGGAGGGACGCGCAGGGTCAGCGGAGAAGAAGCTGGCTGACTTCGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTACTGCAGGAGTACGGCCTGCTGCAGCGACGGCTGGAGAATGTGGAGAACCTGCTTCGAAACAAGAACTTCTGGGTCCTTCGACTGCCCCCAGGCAGCAAGGGGGAGACCCCAAAG
Seq A exon
GTGTCCGGGCCCCTTGAGAATGATGGGGTCTGTTTCTCAGAACAGGAGTGGGAGAACCTGGAGGACTGGCAGAAGGAGCTCTACAGAAATGTTATGGAAAGCAACTATGAGACGCTGGTCTCTCTAA
Seq C2 exon
AGGTCCTTGGCCAGCCAGAGGAAGAAGTGGAGTTGGGCGCAGAGATGGTGGGTGACTTGGTGGAAGAAGGTACCCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006711-'3-5,'3-2,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.285 A=0.140 C2=0.607
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=61.5)
A:
PF0135222=KRAB=WD(100=86.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTGACTTCGAGAAGAC
R:
CAAGTCACCCACCATCTCTGC
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]