MmuEX6004166 @ mm9
Exon Skipping
Gene
ENSMUSG00000052763 | Zfp212
Description
Zinc finger protein 212 [Source:MGI Symbol;Acc:MGI:2682609]
Coordinates
chr6:47876506-47879129:+
Coord C1 exon
chr6:47876506-47876895
Coord A exon
chr6:47877019-47877145
Coord C2 exon
chr6:47879049-47879129
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTGTGGCTTACAATTGCAGGTA
3' ss Score
8.04
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
CACAGGAGGAAACGGCGCGCCACGCCATTAGCTCCAGCCACACCACCTTCACAGACAACAGAGAAAAGCCCGTACTTTCAGACCACAGAAATCTCACTTTGGACAGTGGTGGCTGCTATTCAAGCCGTGGAGAAGAAGATGGAATCACAGGCTGCCCGACTGCAGAGCCTGGAGGGGCGTGCAGGGTCAGCGGAGAAGAAGCTGGCTGACTTCGAGAAGACAGCTGTGGAGTTCAGCAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGCCTGCTGCAGCGGCGGCTGGAGAATGTGGAGAACCTGCTTCGAAACAAGAACTTCTGGGTCCTTCGTCTGCCTCCCGGCAGCAAGGGGGAGACCCCAAAG
Seq A exon
GTATCTGGGTCCCTTGAGAATGATGGAGTCTGTTTCTCGGAGCAGGAGTGGGAGAACCTGGAGGACTGGCAGAAGGAGCTCTACAGAAATGTTATGGAAAGCAACTATGAGACGCTGGTGTCTCTGA
Seq C2 exon
AGGTCCTTGGCCAGCCAGAGGAAGAAGTGGAGTTGGGTGCAGAGATGGTGGGTGACTTGGTGGAAGAAGGTACCCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052763-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.116 C2=0.464
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=61.5)
A:
PF0135222=KRAB=WD(100=90.7)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTGACTTCGAGAAGAC
R:
CAAGTCACCCACCATCTCTGC
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: