RnoEX0101221 @ rn6
Exon Skipping
Gene
ENSRNOG00000026981 | Zfp282
Description
zinc finger protein 282 [Source:RGD Symbol;Acc:1306278]
Coordinates
chr4:77556722-77566762:+
Coord C1 exon
chr4:77556722-77557141
Coord A exon
chr4:77565961-77566087
Coord C2 exon
chr4:77566643-77566762
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAAAACCCTTGTCGGTTCAGGTC
3' ss Score
7.87
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GCTCAAGAATGGGACATGGATGCCAGGAGACCAATGCCTTTTCAGTTCCCGCCCTTTCCAGATAGGGCCCCTGTCTTTCCAGACCGCATGATGCGTGAGCCCCAGTTGCCCACAGCAGAGATCTCGCTCTGGACCGTAGTGGCTGCCATTCAGGCTGTAGAGAGGAAGGTGGATGCCCAGGCTAGCCAGCTGCTGAACTTGGAGGGACGCACAGGCACAGCCGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTTGGTAACCACATGGAGAGCAAATGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTCCAACGTCGGCTGGAGAACCTGGAGAACCTGCTTCGAAACAGGAACTTCTGGGTCCTGCGGCTGCCCCCTGGCAGCAAGGGGGAGGCCCCCAAG
Seq A exon
GTCCCAGTGACCTTCGTCGACATTGCTGTTTACTTCTCTGAGGACGAATGGAAGAACTTGGACGAATGGCAGAAGGAGCTCTACAGCAATCTGGTGAAGGAGAACTACAAAACCCTGATGTCCCTGG
Seq C2 exon
ACACGGATGGCCCAGTGTCCAAGCCAGATGCTCCAGTGCAGGCAGAACCCAGGGAAGAGCCTTGTGTGTGGGAGCAGCATCACCCTGAAGAGAGAGAGATCCCAGGGACTGCAGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026981-'2-6,'2-5,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=0.036 C2=1.000
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=57.1)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACATGGAGAGCAAATGGG
R:
TCTCTTCAGGGTGATGCTGCT
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]