HsaEX0073347 @ hg19
Exon Skipping
Gene
ENSG00000170265 | ZNF282
Description
zinc finger protein 282 [Source:HGNC Symbol;Acc:13076]
Coordinates
chr7:148895425-148904562:+
Coord C1 exon
chr7:148895425-148895844
Coord A exon
chr7:148903788-148903914
Coord C2 exon
chr7:148904443-148904562
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTAACCGCTTGTTGGCTTAGGTT
3' ss Score
7.81
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GCTCAAGAATGGGACATGGACGCCCGGCGGCCAATGCCTTTTCAGTTCCCACCCTTTCCAGATAGGGCACCTGTCTTCCCCGACCGCATGATGCGAGAGCCCCAGTTGCCCACAGCAGAGATCTCACTCTGGACTGTGGTGGCTGCCATTCAGGCTGTGGAGAGGAAGGTGGATGCCCAGGCCAGCCAGCTGCTGAACCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGTGAAAAGACGGCCGTGGAATTTGGGAACCACATGGAGAGCAAGTGGGCCGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAACTTGGAGAACTTGCTGCGCAACAGGAACTTCTGGGTCCTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq A exon
GTTCCAGTGACTTTTGTCGACATTGCTGTGTACTTCTCCGAAGACGAGTGGAAGAACTTGGACGAATGGCAGAAGGAGCTTTATAACAACCTTGTTAAGGAGAACTACAAAACCCTCATGTCCCTGG
Seq C2 exon
ACGCGGAGGGCTCAGTCCCCAAGCCAGATGCTCCAGTCCAGGCTGAGCCCAGGGAAGAACCTTGTGTGTGGGAGCAGCGCCACCCCGAAGAGAGAGAAATCCCAATGGATCCCGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170265-'1-4,'1-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.041 C2=0.982
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=57.1)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAAGACGGCCGTGGAATT
R:
CCCACACACAAGGTTCTTCCC
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)