GgaEX1065611 @ galGal4
Exon Skipping
Gene
ENSGALG00000027143 | ZNF746
Description
zinc finger protein 746 [Source:HGNC Symbol;Acc:HGNC:21948]
Coordinates
chr2:483995-486666:+
Coord C1 exon
chr2:483995-484291
Coord A exon
chr2:485033-485159
Coord C2 exon
chr2:486253-486666
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACTTTTATTTGTAATTCCAGGTA
3' ss Score
7.97
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GCTTCGTCGTGGAGCACGCGCACCCGCAGGGCCCGGGCGGCGCAGGCTGCGGGGCAGGGCGAGGCTCAGGCCCAGCAGCTGCGGGAGCTGTGGAGCCGCACCGAGAAGGCCGAGCGGCGGCTGTTGGCCTTCGAGAACCTGGTGGCAGAGCTGGGCAGCAACCTGGCAGCCCTGGGCAACCTGCTGCAGGACTACGGGCACCTCCAGCAGCGCCTGGACAATGTGGAGAACCTGCTGAAGAACAGGAACTTCTGGATCCTGCGGCTGCCCCCCGGCACCCGGGGTGAGGTGCCCAAG
Seq A exon
GTACCCATCACATTTGATGACATTGCCGTGTACTTCAACGAGCAGGAGTGGGAGAGACTGGACAGCTGGCAGAAGGATCTGTACAAAGCTGTGATGAGGGGTAACTACGAGACCCTGATCTCCCTGG
Seq C2 exon
ACTATGCTGTGTCCAAGCCTGACATCCTGTCTCGAATTGAGAGGGGTGAAGAGCTCTGTGTCAAAGACTGTTGGGAGCCCCCACAGACGCTCAACCGAGATGGTCCAGAATCCCCACGGACCATCCAGGATGGGCAGGAGCTCACACAGACACACAACACAGGCAGTGAGGAACCTCTTCAGGCACACATCCAAGACAATGAGGAGCCCATACAGGACTGCAGCAAAGACAGTGAGGAGCTGTTGAAGACATGCCTCAAAGATGGTCAGGAACCCACACAAACGTGTATCACAGACAGTCAGGATACCCCACAAACAGGCATCGAAGATCGTCAGGAGCCCTTGCAGGCACCAGAAGAGATGGACCAGATGGAGGAGGCTTTGGGAAAAGATGTTCGCGTGGAAGCTGATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027143-'3-7,'3-1,5-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.000 C2=0.820
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGGACAATGTGGAGAACC
R:
TCACTGCCTGTGTTGTGTGTC
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]