RnoEX0101356 @ rn6
Exon Skipping
Gene
ENSRNOG00000006703 | Zfp398
Description
zinc finger protein 398 [Source:RGD Symbol;Acc:1562129]
Coordinates
chr4:77523517-77536191:+
Coord C1 exon
chr4:77523517-77523912
Coord A exon
chr4:77535613-77535739
Coord C2 exon
chr4:77536078-77536191
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTATGTGATTATAATTTTAGGTG
3' ss Score
7.42
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ACTTCTGAATGGGACTCGGAATGCCTTACATCCCTGCAGCCCCTTCCTCTTCCTCCACCTCCAGCAGCAAATGAGGCACATCTGCAGACTGCAGCCATTTCCCTGTGGACAGTGGTGGCTGCTGTGCAGGCCATAGAGAGGAAGGTGGAAGTCCACAGCCGGCGACTCCTCCACCTAGAAGGCAGGACAGGGACAGCAGAGAAGAAACTAGCAGGCTGTGAAAAGACAGTGACAGAGCTTGGGAACCAGCTGGATGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTATGGGCTGCTGCAGCGGCGGTTGGAGAACTTGGAGAACTTGTTGAGAAACAGGAACTTCTGGATCCTGCGGCTGCCCCCAGGTATTAAAGGAGATATCCCAAAG
Seq A exon
GTGCCTGTGGCATTTGATGATGTCTCCATCTACTTTTCCACTCCAGAGTGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGCAACTACGAGTCTCTCATCTCCATGG
Seq C2 exon
ATTATGCCATGAATCAACCTGATGTTTTATCCCAGATTCAACCAGAAGGAGAACACAGTACAGATGACCAACCAAGGCCAGAAGCAAGTGAGATGCCTGCAGACCCCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006703-'5-5,'5-3,7-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.821
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=60.6)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENSRNOT00000008743fB16933
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGTGACAGAGCTTGGGA
R:
CTGGCCTTGGTTGGTCATCTG
Band lengths:
254-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]