BtaEX0041286 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020445 | ZNF398
Description
zinc finger protein 398 [Source:HGNC Symbol;Acc:HGNC:18373]
Coordinates
chr4:113053083-113061263:+
Coord C1 exon
chr4:113053083-113053478
Coord A exon
chr4:113060026-113060152
Coord C2 exon
chr4:113061150-113061263
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCAGTGTGTCATAATTGCAGGTG
3' ss Score
8.11
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ACTTCCGAATGGGATTCCGAATGCCTTACCTCCCTGCAGGCGCTCCCTCTTCCCGCAGCCCCAGCGGCAAATGAAGCTCACTTGCAGACCGCGGCCATCTCCCTGTGGACAGTGGTGGCGGCCGTGCAGGCCATTGAGAGAAAGGTGGAAGTCCACAGCCGGCGACTGCTGCACCTGGAGGGCCGGACGGGGACGGCAGAGAAGAAGCTGGCCAGCTGTGAGAAGACAGTGGCGGATCTCGGAAACCAGCTGGAGGGCAAGTGGGCTGTGCTGGGGACCCTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTAGAGAACTTGGAGAACCTGCTGAGGAACAGGAACTTCTGGATCCTGCGGCTGCCCCCGGGTATCAAAGGAGACATTCCAAAG
Seq A exon
GTGCCTGTGACATTCGATGATATCTCCATCTACTTTTCCACTCCAGAATGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGAAACTATGAGTCTCTCATCTCCATGG
Seq C2 exon
ATTATGCCATGAATCAACCCGATGTCTTATCTCAGATTCAGCCAGAAGGAGACCGCAATACAGAGGACCAGACTGGGCCAGAGGAGAGTGGGATTCCCACCGACCCCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020445-'5-3,'5-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.000 C2=0.821
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=60.6)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGAAGACAGTGGCGGATCT
R:
GCCCAGTCTGGTCCTCTGTAT
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development