MmuEX6004162 @ mm10
Exon Skipping
Gene
ENSMUSG00000062519 | Zfp398
Description
zinc finger protein 398 [Source:MGI Symbol;Acc:MGI:1917856]
Coordinates
chr6:47840252-47859532:+
Coord C1 exon
chr6:47840252-47840647
Coord A exon
chr6:47858929-47859055
Coord C2 exon
chr6:47859419-47859532
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGATTGTTATTTTAGGTG
3' ss Score
9.11
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ACTTCTGAATGGGACTCGGAATGCCTTACATCCCTGCAGCCCCTTCCTCTTCCTACACCTCCAGCAGCAAATGAGGCACATCTGCAGACTGCAGCCATTTCCCTGTGGACAGTGGTGGCTGCTGTGCAGGCCATAGAGAGGAAAGTGGAGGTCCACAGCCGGCGACTCCTCCATCTAGAAGGCAGGACAGGGACAGCAGAGAAGAAACTAGCAAGCTGTGAAAAGACAGTGGCAGAGCTTGGGAACCAGCTGGATGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTATGGGCTGCTTCAGCGGCGGTTGGAGAACTTGGAGAACTTGTTGAGAAACAGGAACTTCTGGATCCTGCGGCTGCCCCCAGGTATTAAAGGAGATATCCCAAAG
Seq A exon
GTGCCTGTGGCCTTCGATGACGTCTCCATCTACTTTTCCACCCCAGAGTGGGAAAAATTAGAAGAATGGCAAAAGGAACTTTACAAGAATATCATGAAGGGCAACTACGAGTCTCTCATCTCCATGG
Seq C2 exon
ATTATGCCATGAATCAACCTGATGTTTTATCTCAGATTCAACCAGAAGGAGAACACAGTACAGATGACCAGCCAAGGCCAGAAGCAAGTGAGATTCCTGCAGACCCCAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062519-'3-11,'3-7,12-11=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=0.000 C2=0.821
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=60.6)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGACAGTGGCAGAGCTTGG
R:
GCCTTGGCTGGTCATCTGTAC
Band lengths:
253-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types