BtaEX6029346 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002810 | ZNF777
Description
zinc finger protein 777 [Source:HGNC Symbol;Acc:HGNC:22213]
Coordinates
chr4:113257223-113261531:-
Coord C1 exon
chr4:113260686-113261531
Coord A exon
chr4:113259309-113259435
Coord C2 exon
chr4:113257223-113257336
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCCTATTGTGTGGTTTCAGGTC
3' ss Score
8.4
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CCCTTCTCTCCCACTCCGCCCACCATCAAGAAGCCCCGCTCCACTCCCCCGAAGTTCCTGAGAGAGACCCCCTGACCCTCTCCCCCACCGTGCCCGAGACTGACATGGACCCCCTGCTCCAGAGCCCAGTTTCCCAAAAGGACACCCCCTTCCAGATCTCTGCTGCGGCCCAGAAGGACACCCCACTCCCAACGGCAGAGATCACCCGCTTGGCCGTGTGGGCTGCCGTCCAAGCGGTGGAGAGGAAACTGGAGGCCCAAGCCATGCGGCTCCTGACCCTGGAGGGCAGGACCGGCACAAATGAGAAGAAAATAGCCGACTGCGAGAAGACAGCCGTGGAGTTCGCCAACCACCTGGAGAGCAAGTGGGTCGTGCTGGGGACCCTGCTGCAGGAATACGGGCTGCTGCAGAGGCGGCTGGAGAACATGGAGAACCTGCTGAAGAACAGAAACTTTTGGATCCTGCGGCTGCCCCCGGGCAGCAACGGGGAAGTTCCCAAG
Seq A exon
GTCCCTGTGACATTCGACGACGTGGCCGTCCATTTCTCGGAGCAGGAGTGGGGGAACCTGTCCGAGTGGCAGAAGGAGCTGTACAAGAATGTGATGCGCGGCAACTACGAGTCTCTGGTTTCCATGG
Seq C2 exon
ACTATGCAATTTCCAAACCAGACCTCATGTCACAGATGGAACGAGGGGAGAGGCCGGCCATGCAGGAGCAGGAGGACTCTGAGGAGGGCGAGGCGCCTGCCGATCCCAGTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002810-'1-4,'1-3,2-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=0.023 C2=0.808
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=28.4)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGACAGCCGTGGAGTTCG
R:
CTCAGAGTCCTCCTGCTCCTG
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]