RnoEX0101692 @ rn6
Exon Skipping
Gene
ENSRNOG00000033639 | Zfp777
Description
zinc finger protein 777 [Source:RGD Symbol;Acc:1566056]
Coordinates
chr4:77700069-77706994:-
Coord C1 exon
chr4:77706137-77706994
Coord A exon
chr4:77704251-77704377
Coord C2 exon
chr4:77700069-77700182
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACCCAGTTGTTTGGTTTCAGGTT
3' ss Score
7.74
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CCTTCCTCTCCCACTCCACCCACCATCAGGACGCTCCACTCCACTCTCCTGAAGCTCCTGAGAAAGACTCGCTGACTCTGTCACCCACAGTTCCCGAGACCGACATGGACCCCTTGCTCCAGAGTCCCACTTTACAAAAGGACACTCCCTTCCATACCTCTTCTGCAGCCCAGAAGGAACAGCCACTGCCCACCGCAGAGATCACTCGCTTGGCCGTGTGGGCTGCAGTACAAGCAGTGGAGAGGAAACTGGAGGCCCAGGCCATGCGACTACTGACTCTGGAGAGCAGGACAGGGACAAATGAGAAGAAGATAGCAGACTGTGAGAGAACAGCTGTGGAGTTCGCAAATCATCTGGAGAGTAAGTGGGTTGTACTGGGGACCCTGCTGCAGGAGTATGGGCTGCTGCAGCGGCGCCTGGAGAACATGGAGAATCTGCTAAAAAACAGAAATTTCTGGATCCTGCGGCTACCCCCAGGCAGCAACGGAGAAGTTCCCAAG
Seq A exon
GTTCCTGTCACATTTGATGATGTCGCCGTCCATTTCTCTGAGCAGGAATGGGGAAATCTCTCTGAGTGGCAAAAGGAGCTCTACAAGAATGTAATGAGGGGCAACTATGAGTCTCTGGTCTCTATGG
Seq C2 exon
ACTATGCAATATCCAAACCAGACCTGATGTCACAGATGGAGCGTGGCGAGAGGCCAGCCATGCAGGAGCAAGAGGACTCTGAGGAGGGCGAGACGCCCACGGATCCCAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033639-'4-7,'4-4,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=0.062 C2=0.872
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=28.5)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGCTGTGGAGTTCGCAAA
R:
CCTCAGAGTCCTCTTGCTCCT
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]