MmuEX6004169 @ mm10
Exon Skipping
Gene
ENSMUSG00000071477 | Zfp777
Description
zinc finger protein 777 [Source:MGI Symbol;Acc:MGI:1919556]
Coordinates
chr6:48037555-48044701:-
Coord C1 exon
chr6:48043844-48044701
Coord A exon
chr6:48042029-48042155
Coord C2 exon
chr6:48037555-48037668
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGCAGTTGTTTGGTTTCAGGTT
3' ss Score
6.75
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CCTTCCTCTCGCACTCCGCCCACCGTCAGGAAGCTCCACTCCACTCTCCTGAGGTTCCTGAGAAAGACTCGCTGACTCTCTCACCCACAGTTCCCGAGACCGACATGGACCCCTTGCTCCAGAGTCCCACTTTGCAAAAGGACACTCCCTTCCATACCTCTTCTGCCGCCCAGAAAGAACAGCCACTGCCCACTGCAGAGATCACTCGATTGGCTGTGTGGGCTGCTGTCCAAGCAGTGGAGAGGAAACTGGAGGCCCAGGCCATGCGACTACTGACTCTGGAGGGCAGGACAGGGACAAATGAGAAGAAGATAGCAGACTGTGAGAGAACGGCTGTGGAGTTCGCAAATCATCTGGAGAGCAAGTGGGTTGTACTGGGGACCTTACTGCAGGAGTATGGGCTGCTGCAGCGGCGCCTGGAGAACATGGAGAATCTGCTGAAAAACAGAAACTTCTGGATCCTGCGGCTGCCCCCAGGCAGCAATGGAGAAGTTCCCAAG
Seq A exon
GTTCCTGTCACATTCGATGATGTCGCCGTCCATTTCTCTGAGCAGGAATGGGGAAATCTCTCTGAGTGGCAGAAGGAGCTCTACAAGAATGTAATGAGGGGCAACTATGAGTCTCTGGTCTCTATGG
Seq C2 exon
ACTATGCAATATCCAAACCGGACCTCATGTCACAGATGGAGCGTGGAGAGAGGCCAGCCATGCAAGAACAAGAGGATTCTGAGGAGGGTGAGACGCCCACAGATCCCAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071477-'10-10,'10-9,12-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.669 A=0.023 C2=0.810
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=28.5)
A:
PF0135222=KRAB=PU(95.1=90.7)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGGACAGGGACAAATGAG
R:
TCTGTGACATGAGGTCCGGTT
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types