HsaEX6011154 @ hg19
Exon Skipping
Gene
ENSG00000196453 | ZNF777
Description
zinc finger protein 777 [Source:HGNC Symbol;Acc:22213]
Coordinates
chr7:149148090-149153128:-
Coord C1 exon
chr7:149152268-149153128
Coord A exon
chr7:149151202-149151328
Coord C2 exon
chr7:149148090-149148203
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAGTTATTGTGTGGTTTCAGGTC
3' ss Score
8.13
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CCCTTCTCTCCCACTCCCCCCACCACCAGGAAGCCCCCGTTCACTCCCCTGAAGCTCCTGAGAAAGACCCCCTGACCCTTTCCCCAACAGTTCCCGAGACTGACATGGACCCGCTGCTCCAGAGCCCGGTTTCCCAAAAGGACACCCCTTTCCAGATCTCTTCTGCAGTCCAGAAGGAACAGCCGCTCCCCACGGCAGAGATCACCCGCTTGGCTGTGTGGGCTGCCGTCCAAGCAGTGGAGAGGAAGCTGGAGGCCCAGGCCATGAGGCTACTGACCCTGGAAGGCAGGACGGGGACAAATGAAAAGAAGATAGCCGACTGCGAGAAGACAGCCGTGGAGTTCGCGAACCATCTGGAGAGCAAGTGGGTCGTGTTGGGGACCCTGCTGCAGGAGTATGGGCTGCTGCAGAGGCGGCTGGAGAACATGGAGAACCTGCTGAAAAACAGAAATTTCTGGATCCTGCGGCTGCCCCCCGGCAGCAATGGAGAAGTTCCCAAG
Seq A exon
GTCCCTGTCACATTTGATGATGTTGCTGTGCACTTCTCGGAGCAGGAGTGGGGAAACCTGTCTGAGTGGCAGAAGGAGCTCTACAAGAACGTGATGAGGGGCAACTACGAGTCCCTGGTTTCCATGG
Seq C2 exon
ACTATGCAATTTCCAAACCAGACCTCATGTCACAGATGGAGCGCGGGGAGCGGCCCACCATGCAGGAGCAGGAAGACTCTGAGGAGGGCGAAACGCCGACAGATCCCAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196453-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.638 A=0.070 C2=0.885
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=28.4)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGCGAACCATCTGGAGAG
R:
TTTCGCCCTCCTCAGAGTCTT
Band lengths:
253-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)