GgaEX7001579 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr2:549449-552266:+
Coord C1 exon
chr2:549449-550424
Coord A exon
chr2:551572-551698
Coord C2 exon
chr2:552153-552266
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCAGGTGTTTGCGATTGCAGGTG
3' ss Score
5.06
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
Exon sequences
Seq C1 exon
GGGGTTCCCCAGCCCAGGGGCTCCTCAGACCCTCAGGGCCGTTCCCAACCTACGGGCCGCGTCCCCGCGGTTGCAGCCGTCCCGCTGACGCCCACACCCCATCCCCGCAGGTTCCGGAGTTGGGGATGCGGCCGCGCTGCCCCTCACCCTTCCAGAGAGGAAGCAGCACCTGCACCTCGGAGCGCGAGACGCAGACGGCAGAGCTGTCCCTGACGGTGGTGACGGCCGTGCAGGCGGTGGAGAGGAAGGTGGACTCCCATGCCACCCGCCTGCTGGACCTGGAGGGCCGCACCGGGGTGGCCGAGAAGAAGCTGATCGACTGTGAGAAAACGGCGACGGAGCTGGGCAACCAGCTGGAGAGCAAATGTGCCGCGCTGGGCACCCTCATCCAGGAGTACGGGCTGCTGCAGCGGCGCCTGGAGAACATGGAGAACCTGCTGAAGAACAGGAACTTCTGGATCCTGCGGCTGCCCCCCGGCAGGAAGGGAGAGGTGCCCAAG
Seq A exon
GTGCCGGTGACGTTTGACGACGTGTCCGTCTGTTTCAATGACAAGGAATGGGAGAAGCTGGAGGAGTGGCAGAAGGAGCTGTACAAGAATGTGATGAAGGGGAACTACGAGTCGCTCATCTCCTTGG
Seq C2 exon
ACTATGCAATCTCCAAACCTGGCGTTTTGTCCCAGATCGAGCAGGGGGAGGAACCGCGGGTCAGGAATGAGCAGGACTTGGAGGAGAGTGAGATGATGAGCGATGCCACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028282-'0-2,'0-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=0.000 C2=0.692
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=58.4)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
ENSGALT00000042642fB4511
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCGAGAAGAAGCTGATC
R:
TGCTCGATCTGGGACAAAACG
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]