HsaEX6011152 @ hg19
Exon Skipping
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148963426-148964313:+
Coord C1 exon
chr7:148963426-148963821
Coord A exon
chr7:148963910-148964036
Coord C2 exon
chr7:148964188-148964313
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGCGACACTTATGGTTCCAGGTG
3' ss Score
6.88
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GACCCCGAGACAGACAAGCACACAGAGGACCAGAGTCCTTCGACACCCTTGCCCCAGCCAGCTGCTGAGAAGAACTCGTACCTCTACTCCACGGAAATCACACTGTGGACGGTGGTGGCCGCCATTCAGGCCTTGGAGAAGAAGGTGGATTCCTGCCTGACCCGCTTGCTGACTCTGGAGGGGCGCACGGGGACAGCCGAGAAGAAGCTGGCCGACTGCGAGAAGACAGCTGTGGAGTTCGGGAACCAGCTGGAGGGCAAGTGGGCCGTGCTGGGGACCTTGCTGCAGGAGTACGGGCTGCTGCAGAGGCGGCTGGAGAATGTGGAGAACTTGCTGCGCAACAGGAACTTCTGGATCTTGCGGCTGCCCCCGGGCAGCAAGGGGGAGGCCCCCAAG
Seq A exon
GTGCCCGTGACCTTCGATGATGTGGCCGTGTATTTCTCTGAGCTGGAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
Seq C2 exon
ATTATGCAATCTCCAAACCAGACATCCTCACCCGGATAGAGAGGGGAGAGGAGCCTTGTCTTGACCGGTGGGGCCAGGAGAAGGGGAATGAAGTAGAGGTGGGACGTCCAAGGATGATGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.174 A=0.000 C2=0.488
Domain overlap (PFAM):
C1:
PF124173=DUF3669=WD(100=60.6)
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGCGAGAAGACAGCTGTG
R:
TCAAGACAAGGCTCCTCTCCC
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)