MmuEX0053612 @ mm10
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr6:47945429-47949019:+
Coord C1 exon
chr6:47945429-47945751
Coord A exon
chr6:47945883-47945962
Coord C2 exon
chr6:47948894-47949019
Length
80 bp
Sequences
Splice sites
3' ss Seq
TGTATATTTCTCTGAATTAGAGT
3' ss Score
6.6
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
CCAAATGCAGAGAAGAGCTCATACCTCTATTCCATAGAAATCACACTGTGGACCGTGGTGCCTGCTGTTCAGGCCTTGGAGAAGAAAAGTGGATTCTTGCCTGGCCCGCTTGCTGACTCTGGAGGGATGCTCAGGGACAGCAGAGAAGAAGCTGGCTGACTGTGAGAAGACAGCTGTGGAGTTCAGCAGCCAGCTGGAGGGCAAGTTGGCCGTGCTGGGGACCCTGCCTCAGGAGTCTAGGCTGCTGCATGAAGAACCTCATGGGCAACTGGAACTTCTGGGTCCAGCGGCTTCCCCCTGGCAACAAGGGGGAGGTCCCCAAG
Seq A exon
AGTGGGCCAAGCTGGAGGACTGGCAGAAGAGGCTCGACAAGCATGTGATGGGGGCAGCTATGAGATGCTCGTTTCCCTGG
Seq C2 exon
GTATTTCTCTGAGTCCAGAGCAGGCCCCAAGTCCAGCTAGCCCTGCCCAGGAGGAACTGAATCAAAGGCAGACACCTGAGCAGCAGCAAGAGGAAGCAACCATGATTCCACCTGAGCCAGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072653_MULTIEX1-2/3=1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGAAGAACCTCATGGGCA
R:
CTTCCTCTTGCTGCTGCTCAG
Band lengths:
173-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types