HsaINT0187972 @ hg19
Intron Retention
Gene
ENSG00000167528 | ZNF641
Description
zinc finger protein 641 [Source:HGNC Symbol;Acc:31834]
Coordinates
chr12:48738382-48739257:-
Coord C1 exon
chr12:48739128-48739257
Coord A exon
chr12:48738496-48739127
Coord C2 exon
chr12:48738382-48738495
Length
632 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGC
5' ss Score
5.78
3' ss Seq
TTTTCCTTTCCCATGAGCAGGAT
3' ss Score
7.64
Exon sequences
Seq C1 exon
GGCCTGGTAACCATCAAGGATGTGTCACTGTGCTTCTCTCAGGAGGAGTGGCGGAGCCTGGACCCCTCTCAGACAGACTTTTATGGAGAATATGTCATGCAGGAAAACTGTGGGATAGTAGTCTCTCTGA
Seq A exon
GTAAGCATGACCTTCTCCAGCCACTAGAAGATTGGACTCTGGGAGGACGGAGCCATCTGCTTCAGGGCTATTGGATAGTGTCTGTCTAGGACTCTTTATGTGGCAGGGAATCTGTCTATGCTTCCGCTGGAGAAAGAACACTAGGGCCAATCCCAAGAGAATGAGAGTAAATATCATTAAAAAAAAAAAAGTAAAAAAGCAAATGATGCTTAATTGTGGAGTAGAACTTGAGGTTCTTCTTGGTTGGGAATTAGGAGGTTCTCATAAAGCAGAGAGAACTGGAACTGGGTCCTTGTAAACTTGGGAACCATGTAGAGGAAGATAGGGATGCAGGGAGTAGGACTGTCGTAGTAGGACTAAAGTGAAGTTACGCCCAGAAAGGCCAGCTGGGCTGGAAGTATCTGAGTGGAAGAAAACAGGTTCATTGGGAAGGAGAGTGATTTTCTAGGCAGAGAAGAGGGACTTAACAGAAATGGGTGGGGGAAGAGGTTGGGGTGGGGATATGTTTCTTTCTTGACCTTCTTTTGTCTAGAGTTCCAAACAATAGGAAACAGTTTTTTGTATTTTTTTTTCAGAAATATAGAATTGCTGTTGAACTAATTGACAGCTCTATTTTCCTTTCCCATGAGCAG
Seq C2 exon
GATTTCCAATTCCCAAACTGGACATGCTTTCTCAACTAGAAGGAGGAGAAGAACAATGGGTCCCTGACCCCCAGGACTTAGAGGAGAGGGACATTCTGAGGGTCACATATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167528-ZNF641:NM_001172681:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.628
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.5)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCTGGTAACCATCAAGGATG
R:
ATGTGACCCTCAGAATGTCCCT
Band lengths:
238-870
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)