BtaALTD0024724-5/6 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000027431 | ZNF226
Description
Bos taurus zinc finger protein 226 (ZNF226), mRNA. [Source:RefSeq mRNA;Acc:NM_001102350]
Coordinates
chr18:52472242-52477795:+
Coord C1 exon
chr18:52472242-52472342
Coord A exon
chr18:52472343-52472522
Coord C2 exon
chr18:52477750-52477795
Length
180 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTCCCCCTCTGTCTTCCTAGGAC
3' ss Score
12.28
Exon sequences
Seq C1 exon
CGCTTTTCACGATTCATTCAAACTTCCCCGAAATGCGCTTGGGGCCAGCATCTCCTGACCTTTCATTTGGAGAGAAAGAGAAGCAGCGGCTAGAAGCAGAG
Seq A exon
GTTTGACGGCCAAGGGTGATGATGTTCGTGCCCCTGGGCGGAGCGTTTGGTAGCATCTCGGGATGGGGCGGGCTCAGGTCGTGCTTCTTGGGATTTGAGGGTCTCCCCGGCTTTCTGAACCCCTAACCTGACCTCCCACTTATGAAGCTAACACTTTGGCTTCATACTCTGTCACACTGG
Seq C2 exon
GACTCTGCACTTCCCTGGAAGGAGAGAGAAGATGAACATGTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027431-7-1,8-1,9-1,10-1,11-1,12-1-5/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGATTCATTCAAACTTCCCCG
R:
TGAACATGTTCATCTTCTCTCTCCT
Band lengths:
138-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development