BtaEX0041154 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027431 | ZNF226
Description
Bos taurus zinc finger protein 226 (ZNF226), mRNA. [Source:RefSeq mRNA;Acc:NM_001102350]
Coordinates
chr18:52464212-52477795:+
Coord C1 exon
chr18:52464212-52464338
Coord A exon
chr18:52465220-52465312
Coord C2 exon
chr18:52477750-52477795
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTTACTCTGCATGTTCACAGGGT
3' ss Score
6.25
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GAGGCAGTGACCTTCACGGATGTGGCTGTGACCTTCACGGAGGAGGAGTTCAGGCTGCTGGACTCGGCCCAGAAGAAGCTGTACCAGGATGTGATGCTGGAGAACTTCCGGAATCTGGTCTCAGTGG
Seq A exon
GGTGTCACCCCTTCAGACATGATATATTTCACTTAGAAAAGGAAAAAAGGCTTTGGGTGGTGAAGACAGCAACCCAAAGAGAAGGAAAGTCAG
Seq C2 exon
GACTCTGCACTTCCCTGGAAGGAGAGAGAAGATGAACATGTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027431_MULTIEX1-2/10=1-4
Average complexity
C2
Mappability confidence:
89%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTTCACGGATGTGGC
R:
TGTTCATCTTCTCTCTCCTTCCA
Band lengths:
159-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development