RnoEX0101558 @ rn6

Exon Skipping

Gene

ENSRNOG00000019416 | Zfp61

Description

zinc finger protein 61 [Source:RGD Symbol;Acc:1563843]

Coordinates

chr1:81122790-81126135:-

Coord C1 exon

chr1:81126009-81126135

Coord A exon

chr1:81124908-81124976

Coord C2 exon

chr1:81122790-81124248

Length

69 bp

Sequences

Splice sites

3' ss Seq

TGATTCTTGCCTGTTCATAGAGT

3' ss Score

7.44

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

GAGGCAGTAACATTCAAGGATGTGGCTGTGATCTTCACTAAGGAGGAGTTCAGGCTGCTGGACTCCACCCAGAGGAAGCTGTACCAAGATGTGATGGTGGAGAATTTTCGGAACCTGCTCTCAGTGG

Seq A exon

AGTATCAACTTTTCAAACAAGAGAAACCACAGCTAGAAAGAGAAGAGAAGCCTAGGGAGCAAGGTTCAG

Seq C2 exon

GAATGAACAACCAGAGTGAGAGAGGAGCTGTCCAAGGTGGAAGGTCACCGGAAGCCCTTTCCTGCTGGCAAATCTGGCAGTGGGTCACGGACGACTTAACCACATGTCGGGACTCTGTGGTAAATGCTCCTCAGTTACAGGACGATTCTCCCTGCTGGGTCAGGCTAAGGTCATCTCCTGACGTTTCTGAAGATGAGAACTATATAAAGAGTCATAAAGTAAACGTTCCCATCCATACGGGAAGGCTCCCGCTTTCCCAGAAAACTTTACTGACTGAGCCGCAGACTCGTAAGGAGCGATACCAGCAAGTCTCCAAGAGAGATGACCAGGGTCAGAGTAAACCGGATATACACTCTACAAGTAGGAGTTCACATCCCCACCCCGATCGTAGAGGACACAAGAGTAAACAGTCGTATAGCCCCGGCGATCGCGGGAGAGACAGTACAGAGGTGGCGCCATTTGACCAGAATGGAGTGAGTCACACTAGACAGAAAAGCTCC

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000019416-'18-19,'18-16,19-19

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.653 C2=0.419

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF079757=C1_4=WD(100=11.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2)

Main Inclusion Isoform:

ENSRNOP00000026252