HsaEX6095518 @ hg19
Exon Skipping
Gene
ENSG00000167380 | ZNF226
Description
zinc finger protein 226 [Source:HGNC Symbol;Acc:13019]
Coordinates
chr19:44676241-44679582:+
Coord C1 exon
chr19:44676241-44676367
Coord A exon
chr19:44677013-44677105
Coord C2 exon
chr19:44679137-44679582
Length
93 bp
Sequences
Splice sites
3' ss Seq
GTGATTTGGCATTTTCACAGGGC
3' ss Score
6.25
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
GAAGCAGTGACCTTCAAGGACGTGGCTGTGGCCTTCACGGAGGAGGAATTGGGGCTGCTGGGCCCTGCCCAGAGGAAGCTGTACCGAGATGTGATGGTGGAGAACTTTAGGAACCTGCTGTCAGTGG
Seq A exon
GGCATCCACCCTTCAAACAAGATGTATCACCTATAGAAAGAAATGAGCAGCTTTGGATAATGACGACAGCAACCCGAAGACAGGGAAATTTAG
Seq C2 exon
ATACCTTACTTGTAAAAGCTCTTTTGCTCTATGACCTGGCTCAAACTTAAACTTGGATTTGAAGTTAGAAGAAATGTTGGAAGTCATTTATATATGAAGAAATGTTGGAAGGACTCATATATGCATACATTCCTTGAGTGACTATGAATGACTGCCGGGCAGTAACTTCTGGGCTGTGGTTGTAAACTGTGAGCACTACAAAATGTTTTTCCTTATTGATACCATATTATGGTAGGAAAGACATGGAATAAAAAATTTAGATAGTATGTCAGTAGTTGTGTTTTTAAATGGGTTTCATTAGTGCTTAGCAATTGGGAGCTTGGTGGACCATCTCTTGGTTTTGGACCATCTCTTGGTTTCTGTCAGTATGTAAACCAGAAACTTCAAATGTGTCACAAAAGATGAGCAGAACTATCCCGAGGTTCATTAAAGTCTTTTACTCTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167380-'7-10,'7-9,8-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.089 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGGAACCTGCTGTCAGTGG
R:
GCCCGGCAGTCATTCATAGTC
Band lengths:
181-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)