BtaEX0041156 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000027431 | ZNF226

Description

Bos taurus zinc finger protein 226 (ZNF226), mRNA. [Source:RefSeq mRNA;Acc:NM_001102350]

Coordinates

chr18:52480768-52486071:+

Coord C1 exon

chr18:52480768-52480894

Coord A exon

chr18:52481699-52481768

Coord C2 exon

chr18:52484630-52486071

Length

70 bp

Sequences

Splice sites

3' ss Seq

ATGTTCTCATTCTTCAAAAGAGA

3' ss Score

4.24

5' ss Seq

TAGGTAAGC

5' ss Score

8.89

Exon sequences

Seq C1 exon

GAGGCAGTGACCTTCAAGGACGTGGCTGTGGCCTTCACAGAGGAGGAGCTGGGGTTACTGGACTCAGCCCAGAGAAAGCTGTACCAGGATGTGATGGTGGAGAACTTCCGGAACCTGGTCTCAGTAG

Seq A exon

AGATACAAAACACATAGAAAGAGAAGAGAGGCTTTGGATGATGAATTCAGCGACCCAGATAGAAATTTAG

Seq C2 exon

AAGAAAACAATCAGAGTGAGTTGAGTGCCATTCAAGAGAGAGGATTACATGAAGAGCTTTCCTGCTGGCAAATCTGGCAACAAATTGCTAACGACTTAACCAGATGTCAAGACTCCATGATAAATAATTGTCAGCTCCACAAACAAGGTTATTCCCTGCACCAGGTTGGGTCAGGACTATCTATTCAAATTTCTGAAGATGAGAACTATATATTAAATGAGAAAGCAGGTGGTCCTGGTGATACTGGAAATCCAAGGTTTGCATCTTTGAGAGCCCGGGATTCTTGGAGAAAAAGTTCCTTGACTGAGTCACAGAATTACCAGAATAGATACCAGGAAATTTCCACGCAAAGTAAACTGTGTCGGTGTAAAGCGGATGTTGACAGCATTGGTCGGATCTCATACCACCTTGATGATCGAGGAGTACACAAGAATGAAAAGTCTTATTGCCACAATGATTATAGAAAAGACAGCACGGTTTCCACATTGGATCAGAATAGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000027431_MULTIEX1-6/10=5-7

Average complexity

S

Mappability confidence:

90%=100=100%

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.112

Domain overlap (PFAM):

C1:

PF0135222=KRAB=WD(100=95.3)

A:

PF0135222=KRAB=PD(0.1=0.0)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.4),PF0009621=zf-C2H2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF079757=C1_4=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)

Main Inclusion Isoform:

ENSBTAT00000037250fB7978