BtaEX0041153 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027431 | ZNF226
Description
Bos taurus zinc finger protein 226 (ZNF226), mRNA. [Source:RefSeq mRNA;Acc:NM_001102350]
Coordinates
chr18:52462748-52468667:+
Coord C1 exon
chr18:52462748-52462848
Coord A exon
chr18:52464212-52464338
Coord C2 exon
chr18:52467610-52468667
Length
127 bp
Sequences
Splice sites
3' ss Seq
GCTGAGATTATTTGTTGTAGGAG
3' ss Score
2.61
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ACTCTCAGTACTCTCTCAAGACAGTTCTGACCTCCTAGAACCTGTATAATTCAGGACTGTGCCCATCCCCAGGCATAGGAAGAAACATGACCACATTTAAG
Seq A exon
GAGGCAGTGACCTTCACGGATGTGGCTGTGACCTTCACGGAGGAGGAGTTCAGGCTGCTGGACTCGGCCCAGAAGAAGCTGTACCAGGATGTGATGCTGGAGAACTTCCGGAATCTGGTCTCAGTGG
Seq C2 exon
AAGAAAAGATCCAAAGTGAGATGGAGACTATTTCAGAAGTAGGACCACATGAAGAGCTTTCCTGCTGGCAGATCTGGCGACACATTGCAAGTGACTTAACCAGGTGTCAAGACTCCAGGATAAAATGTTCTGAATTCCACCAACAATGTGACTCACCTGGCCAGAATGGGGCAGGACTATCTGTAATTCACACAGGCCAGATACCTTCTCAGTGTAATGAATGTACAAAATCTTTTGATGATCTCTCCAACTTTGACCTTCATCAACAAATTCACTCAGGAGAGAAGTCTCATACATGTTGTGAGTGTGGAAAAAGCTTCTGTTACAGCTCAGCACTTCGCATTCATCAGAGAGTGCACTCGGGAGAGAAACGCTATAAGTGTGATGAGTGTGGCAAGGAATTCAGCCAGAGTTCACAGCTGCAAATTCATCAGAAAGTCCACACTGTAGAGAAGCCATTCAGATGTGAGCAGTGTGGGAAAGGCTTCAGTCGTAGATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027431_MULTIEX1-1/10=C1-3
Average complexity
C2
Mappability confidence:
100%=100=80%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCCCAGGCATAGGAAGA
R:
AGAAGGTATCTGGCCTGTGTGA
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development