HsaEX6095516 @ hg38
Exon Skipping
Gene
ENSG00000263002 | ZNF234
Description
zinc finger protein 234 [Source:HGNC Symbol;Acc:HGNC:13027]
Coordinates
chr19:44144557-44150505:+
Coord C1 exon
chr19:44144557-44144647
Coord A exon
chr19:44148771-44148897
Coord C2 exon
chr19:44150413-44150505
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGGTGTGTTTGATGTTATAGGAG
3' ss Score
6.47
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
TGTTCCAGGCACGATTCTGCCTTCTCTCAAATGGCATAACTCAGGACTCTGCAAATTCCCAGAAACAGGAGGAAAAATGACCACATTCAAG
Seq A exon
GAGGGACTGACCTTCAAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTGTCCAGAGGAATCTGTACCAAGATGTGATGCTGGAGAACTTCAGGAACCTGCTGTCAGTGG
Seq C2 exon
GGCATCACCCCTTCAAACATGATGTATTCCTTTTAGAAAAGGAAAAAAAGCTTGATATAATGAAGACAGCAACTCAAAGAAAAGGGAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000263002_MULTIEX1-3/6=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCCAGGCACGATTCTGC
R:
TCCCTTTTCTTTGAGTTGCTGTCT
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains