RnoEX0048238 @ rn6
Exon Skipping
Gene
ENSRNOG00000055608 | LOC102548695
Description
zinc finger protein 45-like [Source:RGD Symbol;Acc:7529325]
Coordinates
chr1:81161994-81167741:-
Coord C1 exon
chr1:81167529-81167741
Coord A exon
chr1:81163436-81163557
Coord C2 exon
chr1:81161994-81162089
Length
122 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGTTCGGTGCTGTAGGAG
3' ss Score
7.69
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GGCCCTTAGTAGACGGAGTGAGCTGTGACTATAACTCAGTACACTCTCGCCATCAAGCCACACCAAGGAGTGGACACCATGGCTAAAGCTGTGCAGTCATGGGGACAGCCGACGCACGCCACTGAGCAGACTCTCGAGGGCAGTCTTCTCCCCGTCATGTCTTCCCAAGACGAAGCTGTTCCCCAGGAAGACAGAAGGATGACCAGCAGCAAG
Seq A exon
GAGACGGTGACGTTGAAGGACATGACTGTGGTCTTCAGCGAGGAAGAACTGGGGCTGCTGGATGCTGCCCAGAGGAAGCTGTGACGTGATGCTGGAGAGCCTGAGGAATGTGGCATCCCTGG
Seq C2 exon
GGCATCGGATCGGGACTCCAGATGGTTTGCTCAGGCTCAAGAGAGAAGACATGTTTTGGCTGTTGACAGTGGCTCGCTGGAGCAGTGGGTCTATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055608_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTGGACACCATGGCTAA
R:
CCATAGACCCACTGCTCCAGC
Band lengths:
244-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]