BtaEX0041328 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026263 | ZNF45
Description
Bos taurus zinc finger protein 45 (ZNF45), mRNA. [Source:RefSeq mRNA;Acc:NM_001076213]
Coordinates
chr18:52438361-52441508:+
Coord C1 exon
chr18:52438361-52438418
Coord A exon
chr18:52440227-52440353
Coord C2 exon
chr18:52441413-52441508
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAGTGTGATTGATGTTGTAGGAG
3' ss Score
4.31
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GCCTTCCCAAGACTCAGCAGTTCCCCAGAAGGAAGAGGAAAAAATGTCCAAGTTCAAG
Seq A exon
GAGGCAGTGACCTTCAAGGATGTGGCCGTGGTCTTCACAGAGGAGGAGATGGGGCTGCTGGACTTGGCCCAGAGGAAGCTGTACCAGGAAGTGATGCTGGAGAACTTCCGGAACCTGCTCTCAGTGG
Seq C2 exon
GGCATCAATCCTTCACACCAGATGTACCATCCCAATTAGAGAGAGAAGAAAAGCTGCAAATGATAAGGACAGCAGCCCAGAGCTGCTGTTCCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026263_MULTIEX1-1/3=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTCCCAAGACTCAGCAG
R:
CCGAGGAACAGCAGCTCT
Band lengths:
154-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development