MmuEX6008898 @ mm10
Exon Skipping
Gene
ENSMUSG00000074282 | Zfp94
Description
zinc finger protein 94 [Source:MGI Symbol;Acc:MGI:107610]
Coordinates
chr7:24301704-24312495:-
Coord C1 exon
chr7:24312382-24312495
Coord A exon
chr7:24309071-24309197
Coord C2 exon
chr7:24301704-24303873
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACATGTGCTTGCTGTCACAGGAG
3' ss Score
7.85
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
AAGCAGCAGAGAGACAAGGCTTGGGATGTTGGCTCTGGGGTGAGGCTGGGTTCAGGAACCCCACCTGCCTCTGCTTTCACCTGCGCGTGGGTGCAACAGCTGCCATCTTTGTTG
Seq A exon
GAGATGGTGACCTTCAGGGACGTGGCCGTGGTCTTCAGTGAGGAGGAGCTGGGGCTGCTGGACGCTGCTCAGAGGAAGCTGTACCACGATGTGATGCTGGAGAACTTCAGGATGCTGCTCTCAGTGG
Seq C2 exon
GAGACAAGAATCCTGAGGAGATGGAGTCTCTTGAGGAAGTGGGATTGAGGCACCTGTCACATGAGGCGCTTTTCTGCTCACAAATCTGGCAGCAGGTTAGCAGGGACCTAATGAAGGCTGGAGACTGCAGAGTAAGCATCAGGGAAACTGGCTCTCCGTTGAAGCGAGATGATGCACATGGTGCAGACAGGAAGTACAGCAAACATTCCGGTCAGAAACCATGGCTCCAACTCCACTGTGGAACAGATGGTGGTGAAGAACCTTACAGAGAGGAGAGGAGCGAGAAAGACTCTTGGGACTCTCCTCTGCAGGCTAACGGGCGACCCCCCGCAGGAGAGAAGAGGTATAGGTGTGAAAAATGTGACCACGCCTTCTGTCGGTTATCGGGTCTCCAAGCCCATCAGGTGAGGCACACTGGAGAGAAGCCATACAAGTGTGAGGAGTGTGGCAAGGGCTTCACTCGGGCCTCCACCCTTCTGGACCATCAGCGGGGCCACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074282-'8-10,'8-7,12-10
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.199
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=97.6)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.7),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.9),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGAGAGACAAGGCTTGG
R:
TCTGCAGTCTCCAGCCTTCAT
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types