HsaEX0073716 @ hg38
Exon Skipping
Gene
ENSG00000124459 | ZNF45
Description
zinc finger protein 45 [Source:HGNC Symbol;Acc:HGNC:13111]
Coordinates
chr19:43918870-43922217:-
Coord C1 exon
chr19:43922171-43922217
Coord A exon
chr19:43919573-43919699
Coord C2 exon
chr19:43918870-43918962
Length
127 bp
Sequences
Splice sites
3' ss Seq
GAGTGTGTTTGATGTTGTAGGAG
3' ss Score
6.17
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
ACTTGGCACTTCTCCAGAAGGAGGAGGACAAAATGACGAAGTCTAAG
Seq A exon
GAGGCAGTGACATTCAAGGACGTGGCTGTGGTCTTCTCTGAGGAGGAGCTGCAACTGCTGGACCTTGCCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTCAGGAATGTGGTCTCAGTGG
Seq C2 exon
GGCATCAGTCCACACCAGATGGCCTACCACAGTTAGAGAGAGAAGAAAAGCTGTGGATGATGAAGATGGCAACCCAGAGAGATAACTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124459-'17-21,'17-20,19-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.434
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAAGGAGGAGGACAAAA
R:
GGAGTTATCTCTCTGGGTTGCC
Band lengths:
124-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development