BtaEX0041152 @ bosTau6

Exon Skipping

Gene

ENSBTAG00000027431 | ZNF226

Description

Bos taurus zinc finger protein 226 (ZNF226), mRNA. [Source:RefSeq mRNA;Acc:NM_001102350]

Coordinates

chr18:52477750-52485324:+

Coord C1 exon

chr18:52477750-52477795

Coord A exon

chr18:52480768-52480894

Coord C2 exon

chr18:52484630-52485324

Length

127 bp

Sequences

Splice sites

3' ss Seq

GCTGGTATTGTTTGTTGTAGGAG

3' ss Score

6.72

5' ss Seq

TAGGTGAGG

5' ss Score

7.65

Exon sequences

Seq C1 exon

GACTCTGCACTTCCCTGGAAGGAGAGAGAAGATGAACATGTTCATG

Seq A exon

GAGGCAGTGACCTTCAAGGACGTGGCTGTGGCCTTCACAGAGGAGGAGCTGGGGTTACTGGACTCAGCCCAGAGAAAGCTGTACCAGGATGTGATGGTGGAGAACTTCCGGAACCTGGTCTCAGTAG

Seq C2 exon

AAGAAAACAATCAGAGTGAGTTGAGTGCCATTCAAGAGAGAGGATTACATGAAGAGCTTTCCTGCTGGCAAATCTGGCAACAAATTGCTAACGACTTAACCAGATGTCAAGACTCCATGATAAATAATTGTCAGCTCCACAAACAAGGTTATTCCCTGCACCAGGTTGGGTCAGGACTATCTATTCAAATTTCTGAAGATGAGAACTATATATTAAATGAGAAAGCAGGTGGTCCTGGTGATACTGGAAATCCAAGGTTTGCATCTTTGAGAGCCCGGGATTCTTGGAGAAAAAGTTCCTTGACTGAGTCACAGAATTACCAGAATAGATACCAGGAAATTTCCACGCAAAGTAAACTGTGTCGGTGTAAAGCGGATGTTGACAGCATTGGTCGGATCTCATACCACCTTGATGATCGAGGAGTACACAAGAATGAAAAGTCTTATTGCCACAATGATTATAGAAAAGACAGCACGGTTTCCACATTGGATCAGAATAGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSBTAG00000027431-'22-10,'22-2,24-10

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.130

Domain overlap (PFAM):

C1:

NO

A:

PF0135222=KRAB=WD(100=95.3)

C2:

PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=4.4),PF0009621=zf-C2H2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF079757=C1_4=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)

Main Inclusion Isoform:

ENSBTAP00000037087