BtaALTD0024834-2/2 @ bosTau6
Alternative 5'ss
Gene
ENSBTAG00000039075 | ZNF527
Description
Bos taurus zinc finger protein 527 (ZNF527), mRNA. [Source:RefSeq mRNA;Acc:NM_001076914]
Coordinates
chr18:47587428-47588291:+
Coord C1 exon
chr18:47587428-47587544
Coord A exon
chr18:47587545-47587554
Coord C2 exon
chr18:47588196-47588291
Length
10 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TTTTTCTTCCCCAATAACAGGAC
3' ss Score
8.72
Exon sequences
Seq C1 exon
GGATTGGTGACCTTCAGGGATGTAGCTCTGAATTTTTCCCAAGAGGAATGGGAATGGCTGGACTCATCTCAGAAGGATTTGTACAGAGATGTCATGTTGGAGAACTACAGGAACTTG
Seq A exon
GTATGGCTTG
Seq C2 exon
GACTCTCCATTTCTAAGCCCAACATGATCTCCTTATTGGAACAAGGGAAGGAACCTTGGATGGTGGAGAGAGAGATGTCGGATGGTCAACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039075-4-3,5-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAATGGCTGGACTCATCT
R:
CCAATAAGGAGATCATGTTGGGCT
Band lengths:
108-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development