BtaINT0165673 @ bosTau6
Intron Retention
Gene
ENSBTAG00000039075 | ZNF527
Description
Bos taurus zinc finger protein 527 (ZNF527), mRNA. [Source:RefSeq mRNA;Acc:NM_001076914]
Coordinates
chr18:47587428-47588291:+
Coord C1 exon
chr18:47587428-47587544
Coord A exon
chr18:47587545-47588195
Coord C2 exon
chr18:47588196-47588291
Length
651 bp
Sequences
Splice sites
5' ss Seq
TTGGTATGG
5' ss Score
5.53
3' ss Seq
TTTTTCTTCCCCAATAACAGGAC
3' ss Score
8.72
Exon sequences
Seq C1 exon
GGATTGGTGACCTTCAGGGATGTAGCTCTGAATTTTTCCCAAGAGGAATGGGAATGGCTGGACTCATCTCAGAAGGATTTGTACAGAGATGTCATGTTGGAGAACTACAGGAACTTG
Seq A exon
GTATGGCTTGGTAAGGATGTATACCCCCATAATTCAAATCTTCCCTATGAAGTATATTAGTTTCCTCCATTGGGAACATCTAGGGCATCTGAAATGCTTAGCTGGATTTCTACTTCTTGTTCCCAGGAAATTATTCAAAATATTTTCACAGAGTTATAAATGTAGTATTCCTTTTGCCACTGAATGATGGTTTGGGATAGCAGCATGAGTATGTCGTGGGAATTTTTAAAATTGCAAATCATGAGGTCCCATTATAGACCTACAGTATCTGGGAATAGCCCCAATAGTCTGGTTTTAATGAGCCCTCCAAATGGTTCTGATGCTCATTAATATTTGAGAACCATTGTGATTTCTGATTCGGTAGGGTCTGGGTTGGGGCAGCCTGAGAATTTGCATTTCTGTTTGGTTCCAAGACAATGGTTCTTTTCTGCTCTAGTACTTTGAGAATTGCTGCTATGACAGAAGCTTTGTCTTTCTCATCCTCCTTAGAAGCTTCTTTTTATTCTCTGGCCCTTTCTCTAATATCCTTTCTTACCTAGTGACCAAGGGATTGACCAAGGGATTGCTGTCACTGGAACAGCAATAGCAAGTGGATTTGTTTATCTGTCTGTCTGTCTCTTGCTTGTTCTCATTTTTCTTCCCCAATAACAG
Seq C2 exon
GACTCTCCATTTCTAAGCCCAACATGATCTCCTTATTGGAACAAGGGAAGGAACCTTGGATGGTGGAGAGAGAGATGTCGGATGGTCAACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039075:ENSBTAT00000053874:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACCTTCAGGGATGTAGC
R:
CTGCATGTTGACCATCCGACA
Band lengths:
208-859
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development