HsaINT0187531 @ hg19
Intron Retention
Gene
ENSG00000189164 | ZNF527
Description
zinc finger protein 527 [Source:HGNC Symbol;Acc:29385]
Coordinates
chr19:37870022-37871274:+
Coord C1 exon
chr19:37870022-37870148
Coord A exon
chr19:37870149-37871178
Coord C2 exon
chr19:37871179-37871274
Length
1030 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TTTTCTTCCCCTGTGAACAGGAC
3' ss Score
10.84
Exon sequences
Seq C1 exon
GGGTTGGTGACCTTCAGAGATGTGGCGCTAGACTTTTCCCAAGAAGAGTGGGAATGGCTGAAGCCATCTCAGAAGGATTTATACAGAGATGTCATGTTGGAGAACTACAGGAACTTGGTATGGCTTG
Seq A exon
GTAAGGATGTTTCTCCCCCATAATTTAAAAATCTTCCTCTGGGGTGTTTTTGCTTCCTCTGTTGAGAATATCTAGGACATCTTAAGACATCTTAAAAGCACTTACTTGCCTTTCTACTTCCTGTTCCCAGGAAATGATTTGAAATATATATTTGCTTAAATTTTAATTAATTAATTTACTTTTGGCAGACATTCTGAACACATGAAGTAATTTCTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTCTTGTCGCCCAGGCTGGAGTGCAGTGGTGCGATCTCAGCTCACTGCAACCTCCGCCTCCTGGATTCAAGCGATTCTGCTGCCTCAGCCTCCTGAGTAGCAGGGATTACAGGCGCCCACCACCACACCCAGCTAATTTTTGTACTTTTACTAGAGATGGGGTTTCTCCATGTTGGCCAAGCTGGTCTCGAACTCCTGACCTCAGATGATCCACCCACCTTGACCTCCCAAAGTGTTGGGATTACAGGCGTGAGCCACCGCGCCCAGCATATGAAGTAATTTCATAGAGTTGGAAATGAGTAGTTCCCTTTGCCGTAGAATGGTGGTTTGGAACAGCAACATCAGCATGTCCTGGGAATTTGTTAAAATGCAAATTATGAGGCCCCATTCTAGACCTACAAAATCAGAAACTGTGGGAGTAGGCTCAGTAGTCTGGGTTTTAATAAACTCTCCAAATGATCCTGATGTCTGTTAAAGTTTGAGAGCCACTGTAGTTTCTGATGCAGTAGTTCTGGGTTGCGGCCTGAGAATGTGCATTTCTAATTAGTTCCTAGGTGATGGCTGCAGCTGCTGTAGCACTTTGAGAACCACTGTCACGGCAGAAGCTTCATCCTCCTCCTCATCCATACAAGCGTCATTCCATTCTCTAGCTCTTCCTCTAATGTCCATTCTTGCCTGATGATCAAGATATTGGGTCTGCGTCCTAGACAGCTGTGGCATGTTGATTTGTTTGTCTGTATGTCTTTCTGTCTCTTGCTCTCATTTTTCTTCCCCTGTGAACAG
Seq C2 exon
GACTCTCCATTTCTAAGCCCAACATGATCTCCTTACTGGAGCAAGGGAAGGAACCGTGGATGGTGGAGAGAAAGATGTCACAGGGTCACTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189164-ZNF527:NM_032453:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(92.3=92.3)
A:
NA
C2:
PF0135222=KRAB=PD(2.6=11.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACCTTCAGAGATGTGG
R:
CAGTGACCCTGTGACATCTTTCT
Band lengths:
214-1244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)