RnoINT0000479 @ rn6
Intron Retention
Gene
ENSRNOG00000056429 | AABR07002902.1
Description
NA
Coordinates
chr1:88632188-88635003:+
Coord C1 exon
chr1:88632188-88632235
Coord A exon
chr1:88632236-88634881
Coord C2 exon
chr1:88634882-88635003
Length
2646 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
TCTGTGTTCTCCCTTCTCAGGAC
3' ss Score
12
Exon sequences
Seq C1 exon
TTTAGCTTTGGCTGACTCGGACGCGCGCGCCTTCTACAGAGACCGAAG
Seq A exon
GTGAATGGTCTGGTAGTTCTGGGCGGGGACCAGGCGTGTCCCGAATCTTGGGGCTGCGCACGCGGGAGAAGGACCGGGGTGCGGGATTCTAATTGTGGTTTTGATTGTGGTGGTGACTGGTTGTGAATACTTATAAGTGTGCTGTTGTAATCACCTGTCGCCAAGGTGTATATCTGACGGTTGCTGTGCAAACACATGTGATGTTATGTATTCCGGGATCTTGTGATTGTGGAAGTGGTATCCCGTCGTCCTGTAGTGTGTTATACGCCCAATAACCTTTATTTTTGGGGGCTGTGAATACAGTTGTAACTGTGACTGTGTTTGTATCTCTGGGTTAAGTGACCTTGTGTAGTACTGTGTGCTGTGTTCCGTGTCCGTGGCTCTGCGTCGGCACTGCATAGGTATCCTTGTGTTCGTGGAGAGAAGAGGGAGGGAGGGGAAAGGACTTTGTGACAGTGTATAATGCTGTGTGTATGCGGGTGTGGACTATCTTTGCTAATGAGTGAGTGGCTTGCGAGTGAATTTTCAGTTATGGCTGTGGATGATGCAGAGTACTGTGCCTTCTGCGTGCCACCATATGTGATTGTGACTATGTAGGTAGGGCTTTTAGGGATGTTAGGGAAGTGACAGTATCACAATGGCATGCAAACTGACTGGCGTGTATGGAGATATTTACCTGTGACTGTGTCTTCGTGTGTCTCAGTGATGCTAATCACTGTGGTATATAATCCTGTAGAGGGTGTTCGAGAGATGCCTAAGTGGGTAAAGTTCTTGTGGCACAAATCAGTTGCCATAATGTGTTTGTATTCAGTAATCCGAGATCCTACAGAATTCAGAGACAAGAGTTTCCAAAAGCTCTCAGATAATCTAGCCCGGAGTATGTAACAGTGATCAGACCACAAGGTAGAAGTCTAGAACCAACACCCAAGACTCTACACTGCCCTACACATAAGTGGCATTGCACACGCATACCTGAATATGTGCACACACACAAAGATAAAAAATTATTTCTAGGGCTGGAGAGATGGCTCAGTGATTAAGAGGACTGGCTACTCTTCCAGAGGACCAGGTTCAATTTCTAGCACCCACATGGCAGCTTTTCTTTTCTATTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGGTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCCTGTCTGTAACTCTTGTTCCGGGGGATCGGACTCCCTCACGCAGACATACATGCAGGCAAAACACCAATGCACATAAAATAAAATAAGTTATTAAAAAATTATTTCTAGGGCTGGAGAGATGGCTCAGCAATTAATTTCTAGGGGCTGGAGATATGCCTCAGTGGTTTAGAGCACTGACTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAACAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTTTTCTGATGTGTCTGATGACAGCTACAGTGTACTCATATGAATAATATAAATAAATTTTTAAAAAGTTATTTCTAAAGAGTGAAGAGTTGCTATGTGGATATTTTCGTGTGACATATCTTGCAGCACCCAAGTGTGTCAATGAGATATGTCTATGACTACTGTTCTGGCCCCAGCAGATGCTGTGAATGGCAGATTGTGACCCTGGACTGTAGTGACATCAGCTTTACAAGGTGACCCTGAGCTTGGACTGAATGTCCAGCCCTCTCTGACCTCCATCCCATGTACATAGGACAGAAGGACAGCTATCCAAAAGTACCCTGATCACTCATGATTTCTTTCTTCTAACCATTTTCAAAGAACGTGATGCTGAGCTGAGACTATAGCTCAGTGGTTAGCTATTGAGCATCTCCAAAGCCAAGTTCAAAAAACATCAGGTTTTAGTCTCCTTTCCCTGAACCCCTGCCCCCCTTTTTGGAGGGTTTTTCATGACACGGTGTCTTCGTGTTTTTCTGCTGTGAACAGACACCATGACCAATACAACTCTTATAAGGACACCATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCATCAAGGTGGGAGCATGGCAGCATCCAGGCAGGCACAGTGCAGGAGGAGCTGAGAGTTCTACATCTTCATCTGAAGGCTGCTAGGAGAAGACTGACTTCCAGGCAGCTAGGATGAGGGTCTTAAAGCCCACACCCACAGCACAGCGACACACCTACTCCAACAAGGCCACACCTCCAAATGTCACTCCCTGGGCTCAACATATTCAAACCACCACACTGGATCTCTCTGTGTAGCCCTGGCTGTCATGGAACTAGCTCTGTAGACCAGGCTGGCCTCGACCTGACAGAACTAACTGCCTCTGTGTGCGTGTGCGTGAATGCCTGCGTGTGTGTGTGTGTCTATCTTTGAGCCTCTGTAATAAAGTCCTAGCGTTCCCTCTGTTACTGAAGATCATTATTTATTCCATGGATTTCCGTCTGGACCCATTTCCACCTGTATCTCTTGTTCTTTCATTTTCTTTGCATGGGGATTGGGATAGGGGAGGCGAGCACAGGACTCCTGCTGTTTTGCAGGCCTCAGCCTTCAGAGCTCTGGGCCTGAACTTGTCTGTCAGAGTATGGGGGGCTTTACTCCTCTGTGTTCTCCCTTCTCAG
Seq C2 exon
GACTCTTCATGTATCCGGAAGGAGAAATCAGAGTAGGTCAGGTTGTCCTGAATGCCATGGTCCTTCAGGTAGGTTGAAAGTTTCGTTTATGTGTTTGTTTGTTTGTTTTGGCTTTTGAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056429:ENSRNOT00000081905:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]