GgaINT0001423 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:28974137-28974938:+
Coord C1 exon
chrUn_random:28974137-28974296
Coord A exon
chrUn_random:28974297-28974839
Coord C2 exon
chrUn_random:28974840-28974938
Length
543 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
CATCGAAGCTCCACTTCCAGGCC
3' ss Score
3.76
Exon sequences
Seq C1 exon
GCTGTTGCCAGCAAGGAGCCTCTTTGCTTGCAGGAGCCCGTGAGCTTTGCGGAGGTGGCCGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTCTACCGGGACGTGATGCTGGAGACGTACCAGTGCGTGGCCTGGCTGG
Seq A exon
GTGAGGGCTTTGCTGCCTTTCCTCCTCGTTAGGGCTCCTTTGGCAGTGCTGAATGAGCCTCTGCATGCTGAGCCTAGAATAATCTCTCTGCAGTTACTTCTTGACCAATACCACCATAATCGCAAGAAACGACAGACAGAGATGTGTGAGGTTTTAAGGGCTTAGTGTGCTCAACACTCTGTTAAAAGCCCCTGGGTGAGTGCTGGCAAGCAGGCAGCAGCCTGGAGGAGGAGGATCCGCTTTCTGCAAACAGCCCTTCTGTTGCTGAATTGCATGATGCCCCCAGCTCCAGCAGCCAGTTCACTCCCAGGTTACTCCTTTAGCATTTATTGGCTCTCTATTCCTATCCCTTCAACACTTTTGAAGCCTTGAGCGTAGAGCAGTTGGGAAAAAATTGAAGTAAATGTTCTAAAGTATACGTGGTTGCCCGCTATCATTTACCGTGGGGATGGACACACTGCAAAGTTTTTGGGCAAGCACCTACACCAGAATCAGGGGAACACTCTCATCTCCATATTTCTGTCATCGAAGCTCCACTTCCAG
Seq C2 exon
GCCCCAAACCTGGGCTGATCTCCCTGCTTGAAGGAGGGGAAGACCCCTGGATCCCAGATGTGCGTAGCCCGGAGGCCATGCCAGGAGACCTGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018772:ENSGALT00000035876:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=75.9)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTTGCCAGCAAGGAGC
R:
CTCCGGGCTACGCACATCT
Band lengths:
233-776
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]