BtaINT0166002 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046866 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]
Coordinates
chr14:2281740-2282361:+
Coord C1 exon
chr14:2281740-2281866
Coord A exon
chr14:2281867-2282247
Coord C2 exon
chr14:2282248-2282361
Length
381 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
TCCTCTCTCCTCTCGGGCAGGAG
3' ss Score
8.8
Exon sequences
Seq C1 exon
GGCCTCCTGACTTTTGGGGACGTGGCTGTGCACTTCACCCAGGAAGAAGGGGCGCGTCTGGATGCTGGGCAGAGGACCCTGTATAGAGACGTGATGCTGGAGACTTACAGGAACCTGGTCTCTCTGG
Seq A exon
GTGAGGTGATTCAGCCGCAGCCCTTCCCTCCTCCCCACCCCCAGCCCCCCTCAGAGCTAAGGTGGGATCTCGGAGGGGCCAGGCTGGTTGTGACTCTGGGACCAGAGGTGGGACATTCTGCTCCCAGGTGACAGGTGGGGTCTCTGGACCCGTCCCCGGGGCTGCCTGGAGACTAGAGGTGTCCTCGTCTCTCACAGAGGCGGGCCTCTGTTGAGTCCTTATCCCTGCCCTGCTCCCCACCCACCTCAACCTCCTGGGGAGACTCCATGTTTCAGAGCCTGCATGGTAGGGCCAGCTAACCCCCGAGTCCCAGACTGCCTCTGGAGTGGGAAGCCAAGCATGCCCTAGCACTTCACCCATTTCCTCTCTCCTCTCGGGCAG
Seq C2 exon
GAGTTCCAGAATCCAAGCCAGATCTCATCTCCCAACTGGAGCAAGGAAGGGAGCCCTGGGGCTCAGACCTGCTGGGGGCCCAGGAAGCAGAGACTTCGGGAAATGCCGGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046866:ENSBTAT00000063252:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.109 A=NA C2=0.786
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGACTTTTGGGGACGTG
R:
GCATTTCCCGAAGTCTCTGCT
Band lengths:
230-611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development