HsaINT0185564 @ hg19
Intron Retention
Gene
ENSG00000189420 | ZFP92
Description
zinc finger protein 92 homolog (mouse) [Source:HGNC Symbol;Acc:12865]
Coordinates
chrX:152684131-152685790:+
Coord C1 exon
chrX:152684131-152684257
Coord A exon
chrX:152684258-152685685
Coord C2 exon
chrX:152685686-152685790
Length
1428 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GCTTCATATTCCACGCCCAGGAT
3' ss Score
4.53
Exon sequences
Seq C1 exon
GTGCCAGTATCTTTTGAGGATGTGTCCGTGTACTTCACAAAGACAGAATGGAAGCTTCTGGACCTCAGACAAAAGGTCCTCTACAAGCGGGTGATGCTGGAGAACTATAGCCATTTGGTGTCACTGG
Seq A exon
GTAAGTGATCCCTCCACGACATACACACACCCAGTCCCACCTACTCTGTCTCTGGGCTCAGTTTATTTCCGAGATTCCTGTTTGTCGGTTGCTATGAGCCCAAGAATAAATGCATTTCTCCATCAGACCAGTAATGCCAGTAATCCATTGCAGGCCAGCCGCCATCTCAGTAGGATGGTTTTTAGCTAAGTGGTCTGGACCTGTAAATGTTTTAGGTAAATGCGTTGGCCTGTAAGTTTCAGTACCAGTCTTATCTTGTGTATAAAATCGTGGATCGACTAAAGGTCTTTCTACTCAAAAGAGAGATGCAAATTCTACTGGAATATTTATGTGCACTCTTTTAGACTTAATTCGTTTCTATGACGGCTGCATTTTGCATCCGTTCCACTTTGTAAAATTTAGCAACATCTTTTCCTTCCATTGACCAGGGAGGTCCCACATAAGGACAAAGTGTAGACTTGGATTTCAAGCCTTGAGAAGTCCCGGGAGGAGCTGGGGCAGCTTGGAGCACACTGCTCTCCCCCTTCCATGCCAGTGCACACCCACTGCCGGAAGGGGCAGCAATTTTGCCAATTAAAGGGCAAAAGCAGGAGTCACAGGCTAGACGGATGGGGGCCGGAGCACTCAGGAAGGTTTTCAGGTGGGGTAAAGAACGTCTGAGGGTGCCAGTGACTTGCCCCCACCTCACGCAGCTGATGAGAGATGCATGCGTGAAACAGAGTGGGACTGGGCCTCTGGCTTTTCCCCCAGTGTGCCCAGCAAGGCTGGCTGCTGCAGCTAAGCTCAGACACTCCACTTCCCAGTGGAAATGGAAACACTCCACTTCCCCTTGCCGCTGGAGGGGAAATCCAGAGGGTCTTCAACATTGCACTCTACTGCCTTTGGGGTTGTGGGAGTCTGACTCCACAGATTTTGCCTCTGTAATCTAGCCCCATAGAGGGAAAGCAGCTTCATCCCCTGGATTCCTTCTGACACTCACCAGGCAGACCTGGGGTTCCAGGGAGGGGTCTGGGATCCTCAGTGGAGTTGGATGATGAAACAGGGCAATTCAGCTTTCGGGGCCTATGGCTGTCGGCCTCCCAATAGTCCCTGGGGCTTGCAAGCCCTTCTTCTGTCCCTCAGGGTGCCCACACACATCCCCGATTTCTCATGAGCTTCTCAGCCTCCCTGCAGGCCAGGTGACAAACACAGTTGTCCTCATGGCCCAAATCGCCAGCTACTGAAGATCTCCGTGCCCACCTGGCCCTGGACGCGCAGGAGCCCTTGCCCTCGTAGAGGGACTTGGCCCTTTCTCTGAGCCTTCCCAGTAGTGCTTTTTAGAGAGTTCTTTATTCTCTGTTACCTGAAGATATTGAGAATTGCCTGAGTTCAGGAGCGACCCTGCCCTCAGCCATAGTGGTCTTGACCTGCTTCATATTCCACGCCCAG
Seq C2 exon
GATTTTCCTTCTCCAAGCCTCACCTGATCTCCCAATTGGAACGAGGGGAAGGACCCTGGGTAGCAGACATCCCCAGAACCTGGGCCACCGCAGGATTGCACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000189420-ZFP92:NM_001136273:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAGTATCTTTTGAGGATGTGT
R:
AATCCTGCGGTGGCCCAG
Band lengths:
223-1651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)