MmuINT0180043 @ mm10
Intron Retention
Gene
ENSMUSG00000031374 | Zfp92
Description
zinc finger protein 92 [Source:MGI Symbol;Acc:MGI:108094]
Coordinates
chrX:73420164-73421324:+
Coord C1 exon
chrX:73420164-73420290
Coord A exon
chrX:73420291-73421222
Coord C2 exon
chrX:73421223-73421324
Length
932 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGT
5' ss Score
8.17
3' ss Seq
TTCTTCATTTCTTTGAACAGGAT
3' ss Score
9.7
Exon sequences
Seq C1 exon
GTGACAGTGTCTTTTGAAGATGTGTCTGTGTACTTTACAAAGACAGAATGGAGGCTTCTGGACCTCAAACAGAGGACCCTCTACAAGCAAGTGATGCTGGAGAACTACAGCCATCTGGTGTCAGTAG
Seq A exon
GTACGTGACTCTGCTTTGGAACTTTCTTGCTTGTCAATTGCTACGAACCCAAGAATAAGTACATTTCTTTATCTTACCTATAACTTGTAGGTCAGCTGTGCTATTAAAAATAAAGTGTTCTTCTAAATAGCTTGGACTTTTAAATGCTCAGAATATAATCAATAACAACCTGTCAGACCCATTTTCCGCACAAAATCATAGATTCCCAAAACATCTTTCTATTGAGAAACAGATAGCAATTGCTGGAATATTTATTTGCAGCATTTAAGACTCATTTTACAGCAGTTGTAGTTGACCTGCTTTATAGAAGTTAGCAGCATCTTCCACTTACACAGGCCACGAGGCGCCACTCGAAGGCCAGGCAGTATACTTGATTTCCAAGTCTGGAGAAATCTAGGCAGGAGCTGGGGCAACTTCCTTCCAGCTGCTTCAACACTCTTCATTCTCCTGTCTTGTGCGTCTGCAAGAGACTTTCCATCTTGCCAGTTCCAGACAAAAACCAACATTCATTTGGCTGTATGGATGAAGAGTGTCCAAGATTTGGGGTCATACTATTTGCTGGCTGGCATCTTCCTAGCTGAAGTGATGTCCTGACTGCCTTTGGGATGGGGAGGGATTTGTGAGAATGGGCATTCTTCCGTTTTTTTTCTCTCTGACTTCTACAGACCACCCCGTCATCTGACCCCTTGGGAAACTGGTTCATTCCCTGGGTTCTCTCGGATCATCTAGAGCAAGTTGTGGACACATCTTCCCAAAAGACTTTTGGAATTCTCACTTGAGTTTAGTGGAGAAACACGCTGCCTCCGGGCACATAACTAGGGGAAATTTTCCTGGGGAGTTCTTTGCACTCTAAAGACACAGGCTGAGCTCTGTTTAAAAATTATTCTATCCTTAGCTAGAAAGGTGCTAATTTTCTTCATTTCTTTGAACAG
Seq C2 exon
GATTTGCTTTCTCCAAGCCTAACCTGGTATCCCAGCTGGAGCGAGGGGAGAAGCCCTGGATTAGAGATGATGGAATGGAGAGTGCAGCAAGATCCTGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031374:ENSMUST00000033740:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAGTGTCTTTTGAAGATGTGT
R:
AGGATCTTGCTGCACTCTCCA
Band lengths:
223-1155
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types