RnoINT0168748 @ rn6
Intron Retention
Gene
ENSRNOG00000051836 | Zfp92
Description
zinc finger protein 92 [Source:MGI Symbol;Acc:MGI:108094]
Coordinates
chrX:157390990-157391730:-
Coord C1 exon
chrX:157391604-157391730
Coord A exon
chrX:157391092-157391603
Coord C2 exon
chrX:157390990-157391091
Length
512 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TTCTTCATTTCTTTGAATAGGAT
3' ss Score
9.36
Exon sequences
Seq C1 exon
GTGACAGTATCTTTTGAGGATGTGTCTGTGTACTTTACAAAGACAGAATGGAAACTTCTGGATCTCAAACAGAGGAACCTCTACAAGCAGGTGATGCTGGAAAACTACAGTCATTTGGTGTCAGTGG
Seq A exon
GTAAGTGACTCTAGTTCTGAATTTTCTTGCTTGTTGATTGCTATGAACCCAAGAATAAGTGCATTTCTTTATCTGACCTATACTTTGTAGGTCAGTTATGCTATTAAAAATAAACTTCTAAATAGCTTGGACTTTTAAATGCTCAGGATATAATCAATAATGACCTGTCAGACCCACACAAAATCATAGATTCCCAAAACATCTTTCTATTGAGAAACAGATAGCAATTAAACTGAAATATTTATTTACAGCATTTTAGATTCATTTTTAACAGCACATGTAGTTGACATTCAAACTGCTTTATAGAAGTTAGCAACATCTTCCACTTATGAAGGCCATGAGGCCAGATAGTGCACTTGATTTCCAAGCCTGGAGAAATGTAGGCAGGAGCTAGGGCAACTTCCTTCCAGCTGCTTCAACATTCTTCATTCTCCTGTCGTTGTGCATCTGCAAGAGACTTTCCATCTTGCCAATTCCACACAAACCCAACATTTCTTCATTTCTTTGAATAG
Seq C2 exon
GATTTGCTTTCTCCAAGCCTAACCTGGTATCCCAGCTGGAGAAAGGGGAGAAGCCCTGGATTAGGGATGGTGGAATGGAGAGTGCGGCAGGATCCTGTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051836:ENSRNOT00000085139:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAGTATCTTTTGAGGATGTGT
R:
AGGATCCTGCCGCACTCTC
Band lengths:
223-735
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]