BtaINT0166023 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016257 | ZNF74
Description
zinc finger protein 74 [Source:HGNC Symbol;Acc:HGNC:13144]
Coordinates
chr17:74562655-74563168:-
Coord C1 exon
chr17:74563042-74563168
Coord A exon
chr17:74562793-74563041
Coord C2 exon
chr17:74562655-74562792
Length
249 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
GCCGCTTCCTCCCCGCGCAGGGC
3' ss Score
9.87
Exon sequences
Seq C1 exon
GAGTCCGTGACTTTCAAGGACGTGGCCGTGGACTTTACCCAGGAGGAGTGGGGCCAACTGGACTCCCCCCAGAGGGCCTTGTACCGGGATGTGATGCTGGAAAACTACCAGAACCTTCTCTCCCTGG
Seq A exon
GTAAGATGGTGCCCAAGGTGAGGAGGCCAGGCCTGGCAGGATGCGGCCTCCTGTCTCTGCCCTGGAGACAGGGCATCTGCCCATCTTTGCCTGCAGGTGGGGCCTGGAGGAGAGGGAGGGGTGGACAGGCCCTGGGAGCCCAGCCTGCCCTGGAAGGGATGTCAGTCTCCGTGGGGTCCTCCTCTGAGCCCCCTTCCTCAGCGCTGGCGCACAGAGCGCCCAGAGCCACGCCGCTTCCTCCCCGCGCAG
Seq C2 exon
GGCCTCCGGTCTGCAAGCCAGACGTCATCTCCCACCTGGAGCGAGGCGAGGAGCCATGGCAGGCGCCCAGAGACGGGCCTGCGGGGCCCGATCCAGGTGAGTGGGGCGCGGAGGCGGAGCCCCTCCCCGCCGCTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016257:ENSBTAT00000029408:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=NA C2=0.851
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGACTTTCAAGGACGTGGC
R:
CCCCACTCACCTGGATCGG
Band lengths:
228-477
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development