RnoINT0167905 @ rn6
Intron Retention
Gene
ENSRNOG00000030308 | Zfp251
Description
zinc finger protein 251 [Source:RGD Symbol;Acc:1311138]
Coordinates
chr7:117938438-117939014:-
Coord C1 exon
chr7:117938882-117939014
Coord A exon
chr7:117938552-117938881
Coord C2 exon
chr7:117938438-117938551
Length
330 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
AGGGTCCTCACCCTTAACAGGAT
3' ss Score
7.19
Exon sequences
Seq C1 exon
GGTGAGATGCCTCTGACCTTCCAGGATGTGGCTGTGTACTTCTCCAGGGCGGAAGGGCAGCAGCTTAGCCCCCAGGAGCGGGCGCTGTACCGGGATGTGATGTTGGAGAACTATGGGAACGTGGCCTCACTGG
Seq A exon
GTGAGAACTACCCTGGAGTCCTAGCTTACAGTGGGGAATCTCAGAGGGACACGTAGGCAGGAGAAGGGAAAATCCTGCTCTTGTCCCCAGGTACCAGTCTACGTAGTTCTAGGGACTGTTTTCCTTATTGCCAGTGACTTACAGGGCCATTCCTTTCCCCAGTGTAATGACAGAGGCTGTAGGCATTTGACCTCTCTTGCCCCTTGGCCTCCCCTGACCAGTGTGCCCACGCAGGCAGAAAACCCTATCTAGTGAGGAAGACCCAGCAGACAGGGTTCTGCTCAGTCCCGCAGGCTGCAGCAGCTCATCCAGGGTCCTCACCCTTAACAG
Seq C2 exon
GATTCCCAGGCCCTAAGCCAGAGCTGATCTCCCAGCTGGAGCAAGAGGAGGAGCTGTGGGTCCTGGATCTTCTCGGGGCTGAGGAACCAGAAGTCTTGAGAAGCTGCGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030308:ENSRNOT00000028184:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.385
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=91.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGATGCCTCTGACCTTCC
R:
CTGTCCCGCAGCTTCTCAAG
Band lengths:
246-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]