HsaINT0186593 @ hg19
Intron Retention
Gene
ENSG00000198169 | ZNF251
Description
zinc finger protein 251 [Source:HGNC Symbol;Acc:13045]
Coordinates
chr8:145979068-145979706:-
Coord C1 exon
chr8:145979577-145979706
Coord A exon
chr8:145979182-145979576
Coord C2 exon
chr8:145979068-145979181
Length
395 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
AGTGTCCTCATCCTCAACAGGAT
3' ss Score
8.61
Exon sequences
Seq C1 exon
GAGATGCCGCTGACCTTCCAGGATGTGGCCGTGTACTTCTCTCAGGCGGAGGGGCGGCAGCTGGGCCCCCAGCAGCGGGCGCTCTACCGGGATGTGATGCTGGAGAACTATGGGAACGTGGCCTCTCTGG
Seq A exon
GTGAGGCTCTCTGCACTTGGCCTGGTTCGCAGTGGGGGCCTCTGAGGAGCTTGGGAGGCTGCTTTGGCTCTTTGGATCCCAAAGAAGAGGGTCCTGCCCCTTGTCCCCGGGTATCAGTCTGATCTCTACAGAAGGAACATTTCCCATGGGAAAAGCCTGCCTTGCTCCCCAGTTCTAGGGACTTCACTCCCTGTTGCCAGTGGCCCCACTGGTGTCCCTCCAGTGGCAGGAGAGCTGATGAGTGGATTCTCCTTCAGTACTTAGTCTCAGCCCACGGGCCCCCTGACCAACACACGTGCAGGCGTACACACGTGCACACAGGGCCCATCTCTCCACACCTGGCCTGGAAGGCCCAGTGGGCCATGCCAGCTCACCAGTGTCCTCATCCTCAACAG
Seq C2 exon
GATTCCCTGTCCCTAAGCCGGAGTTGATCTCCCAGCTGGAGCAGGGGAAGGAACTTTGGGTCCTGAATCTTCTGGGAGCTGAGGAACCAGATATCTTGAAAAGCTGCCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198169-ZNF251:NM_138367:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.128
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(95.1=88.6)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATGCCGCTGACCTTCCA
R:
TGGCAGCTTTTCAAGATATCTGGT
Band lengths:
239-634
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)