MmuINT0178807 @ mm9
Intron Retention
Gene
ENSMUSG00000022526 | Zfp251
Description
zinc finger protein 251 [Source:MGI Symbol;Acc:MGI:1918841]
Coordinates
chr15:76700237-76700844:-
Coord C1 exon
chr15:76700712-76700844
Coord A exon
chr15:76700351-76700711
Coord C2 exon
chr15:76700237-76700350
Length
361 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
AGGGTCCTCACCCTTAACAGGAT
3' ss Score
7.19
Exon sequences
Seq C1 exon
GGTGAGACGCCTCTGACCTTCCAAGATGTGGCTGTGTACTTCTCCAGGGCAGAAGGGCAGCAGCTTAGCCCCCAGGAGCGGGCGCTGTACCGGGATGTGATGTTGGAGAACTATGGGAACGTGGCTTCACTGG
Seq A exon
GTGAGAACTGCCCTGGAGTCCTGCCCACACTGGGGAGGCTCTGCGGGACACTTAGGCTGATTTGGCTCTGTGATTCCCGGAGAAGGGAAAATCCTGCTTGTGTCCCCAGGTACCAGTCTACCAGAGTTGTAGGGACTGTCCTCCTTGTTGCCAGTGGCCTCACAGTGCTATCCCTTTTCCCATCGAACGACAGAGGTCGTGGGCATTTGAACTCTCTTGCCTCTTGGCCTCCCCTGACCAGTGTGCCCATGCAGGCAGAATACCGTATCTAGTGAGGAAGACCCAGCAGACAGGGTTCTGTCTGTCCCCCACCCCCACCCCCAGGCTGCAGCAGCTCACCCAGGGTCCTCACCCTTAACAG
Seq C2 exon
GATTCCCAGGCCCTAAGCCAGAACTGATCTCCCAGCTGGAGCAAGAGGAGGAGCTGTGGGTCCTGGATCTTCTCGGGGCTGAAGAACCAGAAGTCTTGAGACGTTGCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022526-Zfp251:NM_001007568:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=91.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAGACGCCTCTGACCTTC
R:
TGTCTGGCAACGTCTCAAGAC
Band lengths:
246-607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: