GgaINT1004508 @ galGal4
Intron Retention
Description
NA
Coordinates
chr2:551572-552266:+
Coord C1 exon
chr2:551572-551698
Coord A exon
chr2:551699-552152
Coord C2 exon
chr2:552153-552266
Length
454 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAT
5' ss Score
4.69
3' ss Seq
ATCCCTCCGTCTCTCAACAGACT
3' ss Score
11.15
Exon sequences
Seq C1 exon
GTGCCGGTGACGTTTGACGACGTGTCCGTCTGTTTCAATGACAAGGAATGGGAGAAGCTGGAGGAGTGGCAGAAGGAGCTGTACAAGAATGTGATGAAGGGGAACTACGAGTCGCTCATCTCCTTGG
Seq A exon
GTAAATCCGTGTCCCGAAGGTTCTGGGCATCCTCTCGGCTCCCCCAGAAGGACCCAAACGTCCCACTTTAAAAGGGGGCTTAAAAACACTAAAAGGAGGAGGTTTCCAGTCCTACTCTGTTGCTGCACGGGGCTGTGTAGGGCCACCCCTCCTTGTTCTGGGCACTGTCCCACAGAGCCCTCCTGCGGTCCCCCCGAGCTGTATCCCACCCCGCCGTTGTTCCAAAGGCTTCCCCCCATCCTCTGGGTCTGCTGCCACTGCCGGCCCGGGGGAAAACCAAACAGCCCAACGCAGTGTCAGCTGTGATCTTTTGGGGCTTTGAGTGCCGGAGCTGCAAGAAGTCCCCGCTCTGGGGCCGGAGGTGAAACGCTTTGGGTTTGAGGGGAGCTGGGAGATGGGGGATTTCTGCGTTCCCTCTCCGGTAACCCCCCTCCATCCCTCCGTCTCTCAACAG
Seq C2 exon
ACTATGCAATCTCCAAACCTGGCGTTTTGTCCCAGATCGAGCAGGGGGAGGAACCGCGGGTCAGGAATGAGCAGGACTTGGAGGAGAGTGAGATGATGAGCGATGCCACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028282:ENSGALT00000042642:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.692
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTCCGTCTGTTTCAATGA
R:
GGTGGCATCGCTCATCATCTC
Band lengths:
218-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]