HsaINT0188391 @ hg19
Intron Retention
Gene
ENSG00000204946 | ZNF783
Description
zinc finger family member 783 [Source:HGNC Symbol;Acc:27222]
Coordinates
chr7:148963910-148964313:+
Coord C1 exon
chr7:148963910-148964036
Coord A exon
chr7:148964037-148964187
Coord C2 exon
chr7:148964188-148964313
Length
151 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATTTCTTGTTCTGTGCACAGATT
3' ss Score
9.1
Exon sequences
Seq C1 exon
GTGCCCGTGACCTTCGATGATGTGGCCGTGTATTTCTCTGAGCTGGAGTGGGGCAAGCTGGAGGACTGGCAGAAGGAGCTCTACAAGCACGTGATGAGGGGCAACTACGAGACGCTGGTCTCCCTGG
Seq A exon
GTAAGGCCACGGAGGGAGGATCTGGGCCTCTGTCCACAGGTTGTCTGTGGACAGTCTGTGTCTTTGCTTTGGCTTTTGGTACTTTGGGCATCTCTGCATCTCTGTGGGCATGTGGGGTCCAGCTCTTCCTCATTTCTTGTTCTGTGCACAG
Seq C2 exon
ATTATGCAATCTCCAAACCAGACATCCTCACCCGGATAGAGAGGGGAGAGGAGCCTTGTCTTGACCGGTGGGGCCAGGAGAAGGGGAATGAAGTAGAGGTGGGACGTCCAAGGATGATGGGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204946-ZNF783:NM_001195220:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.488
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGACCTTCGATGATGTGG
R:
CAGTGCCCATCATCCTTGGAC
Band lengths:
249-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)